SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0048609
Gene Symbol: CHAF1A
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.4422732A>C COSM4078995 TCGA-BR-8361-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1248 gatgAGAAGGagaag ACCUUCUU m6b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-340-3p gatGAGACGGAgaag UCCGUCUC m8a Created HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-3605-3p gatgagACGGAGaag CCUCCGUG m6b Created HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-4279 gatgagaAGGAGAag CUCUCCUC m6b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6827-3p gatGAGACGGagaag ACCGUCUC m7b Created HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6868-3p gatgAGAAGGAgaag UUCCUUCU m7b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-1248 gatgAGAAGGagaag ACCUUCUU m6b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-340-3p gatGAGACGGAgaag UCCGUCUC m8a Created HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-3605-3p gatgagACGGAGaag CCUCCGUG m6b Created HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-4279 gatgagaAGGAGAag CUCUCCUC m6b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6827-3p gatGAGACGGagaag ACCGUCUC m7b Created HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6868-3p gatgAGAAGGAgaag UUCCUUCU m7b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146

Mutation Mutation ID Sample Name Cancer Type
chr19:g.4422730G>C COSM3823320 TCGA-D8-A27G-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1248 aggatgAGAAGGaga ACCUUCUU m6b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6868-3p aggatgAGAAGGAga UUCCUUCU m7b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6870-3p aGGATGAGaaggaga GCUCAUCC m7b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-1248 aggatgAGAAGGaga ACCUUCUU m6b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6868-3p aggatgAGAAGGAga UUCCUUCU m7b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6870-3p aGGATGAGaaggaga GCUCAUCC m7b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146

Mutation Mutation ID Sample Name Cancer Type
chr19:g.4422710G>A COSM1200930 587330 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103a-2-5p gaggcggAAGAAGCg AGCUUCUU m7b Created HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-4258 gaGGCGGGagaagcg CCCCGCCA m6b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-4778-3p gaggcgGAAGAAGcg UCUUCUUC m7b Created HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-629-3p gaggcGGGAGAAgcg GUUCUCCC m7b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6867-3p gaggcGGGAGAagcg CUCUCCCU m6b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6875-3p gaggcGGAAGAAgcg AUUCUUCC m7b Created HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-7108-3p gaGGCGGGagaagcg ACCCGCCC m6b Disrupted HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-718 gaGGCGGAAGaagcg CUUCCGCC m8a Created HHHNE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-103a-2-5p gaggcggAAGAAGCg AGCUUCUU m7b Created HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-4258 gaGGCGGGagaagcg CCCCGCCA m6b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-4778-3p gaggcgGAAGAAGcg UCUUCUUC m7b Created HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-629-3p gaggcGGGAGAAgcg GUUCUCCC m7b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6867-3p gaggcGGGAGAagcg CUCUCCCU m6b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-6875-3p gaggcGGAAGAAgcg AUUCUUCC m7b Created HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-7108-3p gaGGCGGGagaagcg ACCCGCCC m6b Disrupted HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146
hsa-miR-718 gaGGCGGAAGaagcg CUUCCGCC m8a Created HHHSE_3685_CHAF1A|NM_005483|exon_CDS|-6.6880463158981|1.99912911630146

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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