SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001220488
Gene Symbol: CDH13
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783420C>T COSM3889076 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1225-3p caGGGGCTCtgcgct UGAGCCCC m7b (m6b->m7b) HHFCT_60316_cluster-8746_266_18
hsa-miR-210-5p CAGGGGCTctgcgct AGCCCCUG m8a Created HHFCT_60316_cluster-8746_266_18
hsa-miR-296-5p caGGGGCCCTgcgct AGGGCCCC m8a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3918 caggGGCCCTGcgct ACAGGGCC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6132 cagggGCCCTGCgct AGCAGGGC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6769a-3p cAGGGGCTCtgcgct GAGCCCCU m8a (m7a->m8a) HHFCT_60316_cluster-8746_266_18
hsa-miR-6836-5p cagggGCCCTGCGct CGCAGGGC m8a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-7160-3p cagGGGCCCTGcgct CAGGGCCC m8a Disrupted HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783415G>A COSM2693915 Gp5D [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1915-5p cgcGGCAAGGgccct ACCUUGCC m7b Created HHFCT_60316_cluster-8746_266_18
hsa-miR-210-5p cgcggCAGGGGCcct AGCCCCUG m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-296-5p cgcggcaGGGGCCCt AGGGCCCC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6752-3p cgcGGCAGGGgccct UCCCUGCC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6801-3p cgcgGCAGGGGccct ACCCCUGC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6810-3p cgcgGCAGGGGccct UCCCCUGC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6851-3p cgcggcAAGGGCCct UGGCCCUU m7b Created HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783414A>G COSM3999956 SNUH_G26_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-210-5p acgcggCAGGGGCcc AGCCCCUG m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6752-3p acgcGGCAGGGgccc UCCCUGCC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6801-3p acgcgGCAGGGGccc ACCCCUGC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6810-3p acgcgGCAGGGGccc UCCCCUGC m7b Disrupted HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783413C>T COSM4063214 T3174 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-210-5p aacgcggCAGGGGCc AGCCCCUG m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3162-3p aacgcGGTAGGGgcc UCCCUACC m7b Created HHFCT_60316_cluster-8746_266_18
hsa-miR-3648 aaCGCGGCaggggcc AGCCGCGG m6b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6752-3p aacgcGGCAGGGgcc UCCCUGCC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6801-3p aacgcgGCAGGGGcc ACCCCUGC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6810-3p aacgcgGCAGGGGcc UCCCCUGC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6869-3p aaCGCGGCaggggcc CGCCGCGC m6b Disrupted HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783408C>T COSM1563465 TCGA-AF-6136-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3648 actgcaaCGCGGCag AGCCGCGG m6b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6869-3p actgcaaCGCGGCag CGCCGCGC m6b Disrupted HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783383G>A COSM4832671 TCGA-IR-A3LH-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1184 tgctcCTGCAGGaat CCUGCAGC m7a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-1205 tgctCCTGCAGgaat UCUGCAGG m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3074-5p tgctcctGCAGGAAt GUUCCUGC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3158-5p tgctcCTGCAGGaat CCUGCAGA m7a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-4722-5p tgCTCCTGCaggaat GGCAGGAG m7b (m7b->m6b) HHFCT_60316_cluster-8746_266_18
hsa-miR-486-5p tgctccTACAGGAat UCCUGUAC m7a Created HHFCT_60316_cluster-8746_266_18
hsa-miR-7152-5p tgctcctACAGGAAt UUUCCUGU m7b Created HHFCT_60316_cluster-8746_266_18
hsa-miR-1184 tgctcCTGCAGGaat CCUGCAGC m7a Disrupted HHFKP_57256_cluster-8746_72_9
hsa-miR-1205 tgctCCTGCAGgaat UCUGCAGG m7b Disrupted HHFKP_57256_cluster-8746_72_9
hsa-miR-3074-5p tgctcctGCAGGAAt GUUCCUGC m7b Disrupted HHFKP_57256_cluster-8746_72_9
hsa-miR-3158-5p tgctcCTGCAGGaat CCUGCAGA m7a Disrupted HHFKP_57256_cluster-8746_72_9
hsa-miR-4722-5p tgCTCCTGCaggaat GGCAGGAG m7b (m7b->m6b) HHFKP_57256_cluster-8746_72_9
hsa-miR-486-5p tgctccTACAGGAat UCCUGUAC m7a Created HHFKP_57256_cluster-8746_72_9
hsa-miR-7152-5p tgctcctACAGGAAt UUUCCUGU m7b Created HHFKP_57256_cluster-8746_72_9
hsa-miR-1184 tgctcCTGCAGGaat CCUGCAGC m7a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-1205 tgctCCTGCAGgaat UCUGCAGG m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3074-5p tgctcctGCAGGAAt GUUCCUGC m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3158-5p tgctcCTGCAGGaat CCUGCAGA m7a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-4722-5p tgCTCCTGCaggaat GGCAGGAG m7b (m7b->m6b) HHFCT_60316_cluster-8746_266_18
hsa-miR-486-5p tgctccTACAGGAat UCCUGUAC m7a Created HHFCT_60316_cluster-8746_266_18
hsa-miR-7152-5p tgctcctACAGGAAt UUUCCUGU m7b Created HHFCT_60316_cluster-8746_266_18
hsa-miR-1184 tgctcCTGCAGGaat CCUGCAGC m7a Disrupted HHFKP_57256_cluster-8746_72_9
hsa-miR-1205 tgctCCTGCAGgaat UCUGCAGG m7b Disrupted HHFKP_57256_cluster-8746_72_9
hsa-miR-3074-5p tgctcctGCAGGAAt GUUCCUGC m7b Disrupted HHFKP_57256_cluster-8746_72_9
hsa-miR-3158-5p tgctcCTGCAGGaat CCUGCAGA m7a Disrupted HHFKP_57256_cluster-8746_72_9
hsa-miR-4722-5p tgCTCCTGCaggaat GGCAGGAG m7b (m7b->m6b) HHFKP_57256_cluster-8746_72_9
hsa-miR-486-5p tgctccTACAGGAat UCCUGUAC m7a Created HHFKP_57256_cluster-8746_72_9
hsa-miR-7152-5p tgctcctACAGGAAt UUUCCUGU m7b Created HHFKP_57256_cluster-8746_72_9

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783367G>A COSM3512876 TCGA-EE-A2M5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1200 tCTCAGGAtacaagt CUCCUGAG m7b Created HHFCT_60316_cluster-8746_266_18
hsa-miR-3713 tctcaGGATACaagt GGUAUCCG m6b Created HHFCT_60316_cluster-8746_266_18
hsa-miR-643 tctcaggATACAAGt ACUUGUAU m7b Created HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783361C>A COSM974292 TCGA-AP-A056-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-125a-5p cacagatCTCAGGGt UCCCUGAG m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-125b-5p cacagatCTCAGGGt UCCCUGAG m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-144-5p cacaGATATCagggt GGAUAUCA m6b Created HHFCT_60316_cluster-8746_266_18
hsa-miR-4319 cacagatCTCAGGGt UCCCUGAG m7b Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-4324 cacagaTCTCAGGGt CCCUGAGA m8a Disrupted HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783354C>A COSM3361932 TCGA-BP-4787-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3689a-5p cgaATATCACAgatc UGUGAUAU m8a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3689b-5p cgaATATCACAgatc UGUGAUAU m8a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3689e cgaATATCACAgatc UGUGAUAU m8a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-3689f cgaATATCACAgatc UGUGAUAU m8a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-4679 cgaatATCACAGAtc UCUGUGAU m8a Disrupted HHFCT_60316_cluster-8746_266_18
hsa-miR-6074 cGAATATCacagatc GAUAUUCA m7a Disrupted HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83783348G>A COSM3512875 TCGA-EE-A29R-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3145-3p ccatgacAAATATCa AGAUAUUU m7b Created HHFCT_60316_cluster-8746_266_18
hsa-miR-6074 ccatgacGAATATCa GAUAUUCA m7a Disrupted HHFCT_60316_cluster-8746_266_18

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83780184A>G COSM2693909 HCT15 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-141-5p gtctGGAAGATctcc CAUCUUCC m7b Disrupted HHFKP_57255_cluster-8746_71_8
hsa-miR-3180-5p gTCTGGAAGatctcc CUUCCAGA m8a (m8a->m7a) HHFKP_57255_cluster-8746_71_8
hsa-miR-4691-5p gtcTGGAGGAtctcc GUCCUCCA m7b Created HHFKP_57255_cluster-8746_71_8
hsa-miR-6792-3p gtcTGGAGGAtctcc CUCCUCCA m7b Created HHFKP_57255_cluster-8746_71_8
hsa-miR-7161-3p gtctggAAGATCTcc UAGAUCUU m7b Disrupted HHFKP_57255_cluster-8746_71_8

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83780171G>A COSM1630014 RK100_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-361-5p tgttcCTGATAAagt UUAUCAGA m7a Disrupted HHFKP_57255_cluster-8746_71_8
hsa-miR-374a-3p tgttcCTGATAAagt CUUAUCAG m7b Disrupted HHFKP_57255_cluster-8746_71_8

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83780163C>A COSM260021 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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