SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001485
Gene Symbol: ATP2C1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.130996746C>T COSM332007 LUAD-B00523 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1179 tcAATGCTatgcaga AAGCAUUC m6b Created HPCB1_27024_G34426.1_130715588
hsa-miR-153-3p tcaatgCTATGCAga UUGCAUAG m7b Created HPCB1_27024_G34426.1_130715588
hsa-miR-5011-3p tcaatgCCATGCAga GUGCAUGG m7b Disrupted HPCB1_27024_G34426.1_130715588

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130996736C>T COSM3587462 TCGA-EB-A5UN-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4699-5p cctAATCTTCTcaat AGAAGAUU m8a Created HPCB1_27024_G34426.1_130715588
hsa-miR-6770-5p cctaatCTTCTCAat UGAGAAGG m7a Created HPCB1_27024_G34426.1_130715588
hsa-miR-6859-5p cctaaTCCTCTCaat GAGAGGAA m7a Disrupted HPCB1_27024_G34426.1_130715588
hsa-miR-4699-5p cctAATCTTCTcaat AGAAGAUU m8a Created HPCB1_27024_G34426.1_130715588
hsa-miR-3159 ccTAATCCTctcaat UAGGAUUA m7b (m7b->m6b) HPCB1_27024_G34426.1_130715588
hsa-miR-1253 cctaaTCTTCTCaat AGAGAAGA m7b Created HPCB1_27024_G34426.1_130715588
hsa-miR-3159 ccTAATCCTctcaat UAGGAUUA m7b (m7b->m6b) HPCB1_27024_G34426.1_130715588
hsa-miR-1253 cctaaTCTTCTCaat AGAGAAGA m7b Created HPCB1_27024_G34426.1_130715588
hsa-miR-6859-5p cctaaTCCTCTCaat GAGAGGAA m7a Disrupted HPCB1_27024_G34426.1_130715588
hsa-miR-6770-5p cctaatCTTCTCAat UGAGAAGG m7a Created HPCB1_27024_G34426.1_130715588

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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