SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_005171
Gene Symbol: ATF1
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819719T>G COSM3359783 TCGA-BP-4771-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819686G>A COSM3998829 SNUH_G26_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3180-5p aatgcCTGGAAaacc CUUCCAGA m6b Disrupted HHFCT_37385_uc001rww.2_8_12
hsa-miR-4645-5p aaTGCCTGGaaaacc ACCAGGCA m7b (m7b->m6b) HHFCT_37385_uc001rww.2_8_12
hsa-miR-4673 aaTGCCTGGAaaacc UCCAGGCA m8a Disrupted HHFCT_37385_uc001rww.2_8_12
hsa-miR-645 aatGCCTAGAaaacc UCUAGGCU m7a Created HHFCT_37385_uc001rww.2_8_12

Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819656C>A COSM159240 PD3991a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3683 aATGTCGCAgaaaga UGCGACAU m8a (m8a->m7a) HHFKP_35987_uc001rww.2_5_41
hsa-miR-544a aatgtcGCAGAAaga AUUCUGCA m6b Disrupted HHFKP_35987_uc001rww.2_5_41
hsa-miR-6068 aatgTCGCAGaaaga CCUGCGAG m6b Disrupted HHFKP_35987_uc001rww.2_5_41
hsa-miR-6738-3p aatgtcGCAGAAaga CUUCUGCC m6b Disrupted HHFKP_35987_uc001rww.2_5_41
hsa-miR-6875-3p aatgtcGAAGAAaga AUUCUUCC m6b Created HHFKP_35987_uc001rww.2_5_41

Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819647A>T COSM1362294 TCGA-AA-3713-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181a-5p ctgctcgTGAATGTc AACAUUCA m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-181b-5p ctgctcgTGAATGTc AACAUUCA m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-181c-5p ctgctcgTGAATGTc AACAUUCA m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-181d-5p ctgctcgTGAATGTc AACAUUCA m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-4262 ctgctcgTGAATGTc GACAUUCA m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-516a-5p ctgCTCGAGAAtgtc UUCUCGAG m8a Disrupted HHFKP_35987_uc001rww.2_5_41

Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819647A>G COSM1362295 TCGA-AD-5900-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4740-3p ctgCTCGGGaatgtc GCCCGAGA m6b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-516a-5p ctgCTCGAGAAtgtc UUCUCGAG m8a Disrupted HHFKP_35987_uc001rww.2_5_41

Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819646G>T COSM1362293 TCGA-AA-3712-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4468 gCTGCTCTagaatgt AGAGCAGA m7a Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-516a-5p gctgCTCGAGAAtgt UUCUCGAG m8a Disrupted HHFKP_35987_uc001rww.2_5_41
hsa-miR-518d-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-518e-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-518f-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-519a-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-519b-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-519c-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-520c-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-520g-5p gctgCTCTAGAatgt UCUAGAGG m7a Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-522-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-523-5p gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-526a gctgCTCTAGAatgt CUCUAGAG m7b Created HHFKP_35987_uc001rww.2_5_41

Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819645C>T COSM1362291 TCGA-DM-A28E-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-513c-5p agctgCTTGAGAAtg UUCUCAAG m8a Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-514b-5p agctgCTTGAGAAtg UUCUCAAG m8a Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-516a-5p agctgCTCGAGAAtg UUCUCGAG m8a Disrupted HHFKP_35987_uc001rww.2_5_41

Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819645C>G COSM69742 TCGA-23-2072-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3925-3p agctgCTGGAGaatg ACUCCAGU m6b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-4530 agCTGCTGGagaatg CCCAGCAG m7b (m6b->m7b) HHFKP_35987_uc001rww.2_5_41
hsa-miR-516a-5p agctgCTCGAGAAtg UUCUCGAG m8a Disrupted HHFKP_35987_uc001rww.2_5_41
hsa-miR-766-3p agctGCTGGAGaatg ACUCCAGC m7b Created HHFKP_35987_uc001rww.2_5_41

Mutation Mutation ID Sample Name Cancer Type
chr12:g.50819645C>A COSM1362292 TCGA-G4-6310-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1251-5p agctGCTAGAGaatg ACUCUAGC m7b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-1287-3p agctGCTAGAGaatg CUCUAGCC m7a Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-4684-5p agctgcTAGAGAatg CUCUCUAC m6b Created HHFKP_35987_uc001rww.2_5_41
hsa-miR-516a-5p agctgCTCGAGAAtg UUCUCGAG m8a Disrupted HHFKP_35987_uc001rww.2_5_41
hsa-miR-517-5p agctgCTAGAGaatg CCUCUAGA m6b Created HHFKP_35987_uc001rww.2_5_41

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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