SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000927
Gene Symbol: ABCB1
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.87550481G>A COSM1452590 TCGA-AQ-A54N-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8055 ccatCTCAAAaagaa CUUUGAGC m6b Created HHFCT_143284_cluster-21497_1_8
hsa-miR-627-3p ccatctcGAAAAGAa UCUUUUCU m7a Disrupted HHFCT_143284_cluster-21497_1_8
hsa-miR-129-5p ccatctCAAAAAGaa CUUUUUGC m7a Created HHFCT_143284_cluster-21497_1_8

Mutation Mutation ID Sample Name Cancer Type
chr7:g.87550476G>T COSM3431822 TCGA-F5-6814-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-627-3p tcGAAAAGAagttaa UCUUUUCU m7a (m7a->m6a) HHFCT_143284_cluster-21497_1_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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