SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001145365 |
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Gene Symbol: | ZNF652 |
Description: | Homo sapiens zinc finger protein 652 (ZNF652), transcript variant 1, mRNA. |
Gene Location: | chr17(-):47366567-47439476 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49289215A>- | ICGC_ssm_v3_95560 | HCC3T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3140-3p |
aaaaaaAAAAGCagccata |
0 | AGCUUUUG | m6b | Disrupted | -0.078000 | -0.075000 | No effect |
hsa-miR-647 |
aaaaaaaaaGCAGCCAta |
0 | GUGGCUGC | m7b | (m6b->m7b) | -0.438000 | -0.434000 |
-0.140000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49289227A>T | COSN1197986 | HCC48T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49289228A>G | COSN1197987 | HCC48T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2681-5p |
caaaGTAAAAaaaaaaaaa |
11 |
GUUUUACC | m6b | Disrupted | -0.062000 | no TS | No effect |
hsa-miR-2681-5p |
caaaGTAAAAaaaaaaaaa |
0 | GUUUUACC | m6b | Disrupted | -0.062 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49290174A>C | COSN6657650 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1294 |
tgcctggccACCTCACccc |
0 | UGUGAGGU | m7b | (m7b->m6b) | 0.044000 | no TS |
0.770000 |
hsa-miR-1914-3p |
tgcctggcCCCCTCacccc |
0 | GGAGGGGU | m6b | Created | no TS | -0.055000 |
-0.010000 |
hsa-miR-4435 |
tgcCTGGCCAcctcacccc |
4 |
AUGGCCAG | m7b | (m7b->m6c) | -0.298000 | -0.276000 | No effect |
hsa-miR-4640-5p |
tgcCTGGCCCcctcacccc |
0 | UGGGCCAG | m7b | (m6c->m7b) | no TS | -0.078000 |
-0.080000 |
hsa-miR-4726-5p |
tgcCTGGCCCcctcacccc |
0 | AGGGCCAG | m7b | (m6c->m7b) | no TS | -0.050000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49291935A>G | COSN15456919 | AOCS-164-1-7 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-136-3p |
tgtttGATGATGaataaat |
0 | CAUCAUCG | m7a | Disrupted | NA | NA |
0.110000 |
hsa-miR-664-3p |
tgtttgatgATGAATAaat |
5 |
UAUUCAUU | m7a | (m7a->m6a) | 0.229000 | 0.130000 |
-0.390000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49293107C>G | COSN4769317 | tumor_4139696 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-301a-5p |
gtatgGTCAGAGgttcctg |
10 |
GCUCUGAC | m7b | Created | -0.025000 | -0.020000 | No effect |
hsa-miR-4256 |
gtatGGTCAGAggttcctg |
3 |
AUCUGACC | m7b | Created | -0.032000 | -0.082000 | No effect |
hsa-miR-649 |
gtatggtcACAGGTTcctg |
4 |
AAACCUGU | m7b | Disrupted | 0.063000 | 0.022000 |
0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49293192T>G | COSN6105355 | RK119_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-10b-3p |
gataGAATCTGTattgtag |
2 |
ACAGAUUC | m8a | Disrupted | -0.001000 | 0.082000 |
2.570000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49293442T>A | COSN6105356 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49294551G>A | COSN8837990 | AOCS-137-1-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2114-3p |
gtcagatAGGCTCattcgg |
7 |
CGAGCCUC | m6b | Disrupted | -0.178000 | -0.138000 | No effect |
hsa-miR-627 |
gtcagatAGACTCAttcgg |
8 |
GUGAGUCU | m7b | Created | -0.190000 | -0.233000 | No effect |
hsa-miR-924 |
gtcagatAGACTCattcgg |
10 |
AGAGUCUU | m6b | Created | -0.111000 | -0.110000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49295158G>A | ICGC_8C7827CA-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-143-5p |
cgccACTGCACtccagcct |
0 | GGUGCAGU | m7b | Created | no TS | 0.08 |
-0.29 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49295537T>C | COSN6105357 | RK119_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3140-5p |
atATTCAGGTagtcatctt |
9 |
ACCUGAAU | m8a | (m8a->m7b) | -0.057000 | -0.030000 |
-0.430000 |
hsa-miR-5002-3p |
atattcaGGCAGTCAtctt |
0 | UGACUGCC | m8a | Created | no TS | -0.197000 |
-2.970000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49295698G>C | ICGC_8C782C98-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-149-3p |
tcagCCTCCCaaagtgctg |
0 | AGGGAGGG | m6b | Created | 0.017 | 0.017 | No effect |
hsa-miR-30b-3p |
tcagCCTCCCAaagtgctg |
0 | CUGGGAGG | m7b | Created | -0.032 | -0.005 | No effect |
hsa-miR-30c-1-3p |
tcagcCTCCCAaagtgctg |
0 | CUGGGAGA | m6b | Created | no TS | 0.047 | No effect |
hsa-miR-30c-2-3p |
tcagcCTCCCAaagtgctg |
0 | CUGGGAGA | m6b | Created | no TS | 0.044 | No effect |
hsa-miR-3122 |
tcagccTCCCAAagtgctg |
0 | GUUGGGAC | m6b | Created | no TS | 0.08 | No effect |
hsa-miR-3689a-3p |
tcagCCTCCCAaagtgctg |
0 | CUGGGAGG | m7b | Created | -0.041 | -0.014 | No effect |
hsa-miR-3689b-3p |
tcagCCTCCCAaagtgctg |
0 | CUGGGAGG | m7b | Created | -0.041 | -0.014 | No effect |
hsa-miR-3689c |
tcagCCTCCCAaagtgctg |
0 | CUGGGAGG | m7b | Created | -0.041 | -0.014 | No effect |
hsa-miR-4728-5p |
tcagCCTCCCAaagtgctg |
0 | UGGGAGGG | m7a | Created | 0.01 | 0.017 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49296679T>A | COSN1197988 | HCC122T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-217 |
aggTGCAGTAatagcacac |
0 | UACUGCAU | m7a | (m6b->m7a) | no TS | 0.024000 |
0.010000 |
hsa-miR-509-3-5p |
aggTGCAGTAatagcacac |
0 | UACUGCAG | m7a | (m6b->m7a) | -0.111000 | -0.071000 | No effect |
hsa-miR-509-5p |
aggTGCAGTAatagcacac |
0 | UACUGCAG | m7a | (m6b->m7a) | -0.120000 | -0.083000 | No effect |
hsa-miR-217 |
aggTGCAGTAatagcacac |
0 | UACUGCAU | m7a | (m6b->m7a) | no TS | 0.024 |
0.01 |
hsa-miR-509-3-5p |
aggTGCAGTAatagcacac |
0 | UACUGCAG | m7a | (m6b->m7a) | -0.111 | -0.071 | No effect |
hsa-miR-509-5p |
aggTGCAGTAatagcacac |
0 | UACUGCAG | m7a | (m6b->m7a) | -0.12 | -0.083 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49296697G>T | COSN1197989 | HCC35T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1273g-3p |
agtGCAGTGGctattcaca |
1 |
ACCACUGC | m7b | (m7b->m6c) | -0.123000 | -0.051000 |
0.520000 |
hsa-miR-3117-5p |
agtgcAGTGTCTattcaca |
2 |
AGACACUA | m7a | Created | -0.108000 | -0.108000 | No effect |
hsa-miR-4252 |
agtgCAGTGGCtattcaca |
8 |
GGCCACUG | m7b | Disrupted | -0.054000 | -0.020000 | No effect |
hsa-miR-449b-3p |
agtgcaGTGGCTattcaca |
6 |
CAGCCACA | m6b | Disrupted | -0.250000 | -0.253000 | No effect |
hsa-miR-1273g-3p |
agtGCAGTGGctattcaca |
0 | ACCACUGC | m7b | (m7b->m6c) | -0.123 | -0.051 |
0.52 |
hsa-miR-3117-5p |
agtgcAGTGTCTattcaca |
0 | AGACACUA | m7a | Created | -0.108 | -0.108 | No effect |
hsa-miR-4252 |
agtgCAGTGGCtattcaca |
0 | GGCCACUG | m7b | Disrupted | -0.054 | -0.02 | No effect |
hsa-miR-449b-3p |
agtgcaGTGGCTattcaca |
0 | CAGCCACA | m6b | Disrupted | -0.25 | -0.253 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49296729T>C | COSN6105358 | RK163_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1245b-5p |
gagacAAGGCCTtgctatg |
0 | UAGGCCUU | m7b | Created | no TS | -0.025000 |
-0.030000 |
hsa-miR-3142 |
gagacAAGGCCTTgctatg |
0 | AAGGCCUU | m8a | Created | no TS | 0.003000 |
-0.020000 |
hsa-miR-3922-5p |
gagacaaGGCCTTGctatg |
0 | UCAAGGCC | m7b | Created | no TS | -0.088000 | No effect |
hsa-miR-4312 |
gagACAAGGCCttgctatg |
0 | GGCCUUGU | m8a | Created | no TS | 0.017000 | No effect |
hsa-miR-451b |
gagacaaggTCTTGCTAtg |
1 |
UAGCAAGA | m8a | (m8a->m7a) | 0.079000 | 0.058000 |
0.080000 |
hsa-miR-4696 |
gagacaagGTCTTGCtatg |
9 |
UGCAAGAC | m7b | Disrupted | 0.040000 | 0.046000 |
0.120000 |
hsa-miR-4708-3p |
gagacaagGCCTTGCTatg |
0 | AGCAAGGC | m8a | Created | -0.046000 | -0.148000 |
-0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49296999C>T | COSN7437236 | 8057484 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-548c-3p |
accagcATTTTTaggcgat |
1 |
CAAAAAUC | m6b | Created | 2.444000 | 2.698000 |
-0.480000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49297348T>G | COSN5220478 | SS6003323 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.49297628T>A | COSN5417243 | RK134_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3655 |
ttcagaGACAAGatgtatc |
3 |
GCUUGUCG | m6b | Created | -0.024000 | -0.076000 |
-0.020000 |
hsa-miR-4474-5p |
ttcaGAGACTAgatgtatc |
0 | UUAGUCUC | m7b | Disrupted | -0.093000 | 0.011000 |
1.310000 |
hsa-miR-554 |
ttcagaGACTAGatgtatc |
7 |
GCUAGUCC | m6b | Disrupted | -0.073000 | no TS |
0.110000 |
hsa-miR-593-3p |
ttCAGAGACAagatgtatc |
2 |
UGUCUCUG | m8a | (m7b->m8a) | -0.104000 | -0.181000 | No effect |