SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001083621 |
---|---|
Gene Symbol: | ZBTB40 |
Description: | Homo sapiens zinc finger and BTB domain containing 40 (ZBTB40), transcript variant 1, mRNA. |
Gene Location: | chr1(+):22778343-22857650 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22526516C>T | COSN1099292 | HCC41T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3152-3p |
agcaccaaCTAACACAgtc |
0 | UGUGUUAG | m8a | Created | no TS | -0.306000 |
-1.010000 |
|
hsa-miR-4259 |
agcaCCAACTaacacagtc |
2 |
CAGUUGGG | m6b | Created | -0.257000 | -0.372000 | No effect | |
hsa-miR-4715-5p |
agcaCCAACTaacacagtc |
0 | AAGUUGGC | m6b | Created | no TS | -0.134000 |
-1.100000 |
|
hsa-miR-92a-1-5p |
agcaCCAACCaacacagtc |
5 |
AGGUUGGG | m6b | Disrupted | -0.142000 | no TS |
0.020000 |
|
hsa-miR-3152-3p |
agcaccaaCTAACACAgtc |
0 | UGUGUUAG | m8a | Created | no TS | -0.306 |
-1.01 |
|
hsa-miR-4259 |
agcaCCAACTaacacagtc |
0 | CAGUUGGG | m6b | Created | -0.257 | -0.372 | No effect | |
hsa-miR-4715-5p |
agcaCCAACTaacacagtc |
0 | AAGUUGGC | m6b | Created | no TS | -0.134 |
-1.1 |
|
hsa-miR-92a-1-5p |
agcaCCAACCaacacagtc |
5 |
AGGUUGGG | m6b | Disrupted | -0.142 | no TS |
0.02 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22526533G>T | COSN15422583 | AOCS-139-19-0 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22526648G>A | COSN6446204 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1184 |
cgctGCTGCAGcctctatg |
0 | CCUGCAGC | m7b | Created | no TS | -0.108000 |
0.040000 |
|
hsa-miR-3188 |
cgctgctgcAGCCTCTatg |
0 | AGAGGCUU | m7a | (m6b->m7a) | NA | NA |
0.210000 |
|
hsa-miR-485-5p |
cgctgctgCAGCCTCTatg |
0 | AGAGGCUG | m8a | Created | -0.039000 | -0.151000 |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22527060A>C | COSN15613457 | C0046T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2052 |
tccCAAAACAaagctctgg |
2 |
UGUUUUGA | m7a | (m7a->m6a) | 0.107000 | 0.070000 |
0.140000 |
|
hsa-miR-29b-2-5p |
tcccaAAACCAagctctgg |
0 | CUGGUUUC | m6b | Created | no TS | 0.042000 | No effect | |
hsa-miR-4453 |
tcccaaaaCCAAGCTCtgg |
0 | GAGCUUGG | m8a | Created | no TS | -0.140000 |
-5.450000 |
|
hsa-miR-4538 |
tcccaaaaCCAAGCTCtgg |
0 | GAGCUUGG | m8a | Created | no TS | -0.159000 |
-5.420000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22527151T>C | COSN8436943 | AOCS-169-1-0 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3927 |
tggtattccCTACCTGaag |
0 | CAGGUAGA | m7a | (m6b->m7a) | NA | NA |
-0.290000 |
|
hsa-miR-5584-5p |
tggtaTTCCCTacctgaag |
0 | CAGGGAAA | m6b | Created | 0.150000 | 0.117000 |
-0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22528406G>A | COSN6025918 | RK183_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-129-1-3p |
attgctgAGGGCTTatagg |
0 | AAGCCCUU | m7a | Disrupted | 0.005000 | 0.005000 |
1.510000 |
|
hsa-miR-129-2-3p |
attgctgAGGGCTTatagg |
0 | AAGCCCUU | m7a | Disrupted | 0.005000 | 0.005000 |
1.960000 |
|
hsa-miR-4687-5p |
attgctGAGGGCTtatagg |
2 |
CAGCCCUC | m7b | Disrupted | -0.293000 | -0.154000 |
1.720000 |
|
hsa-miR-99a-3p |
attgctgaGAGCTTatagg |
0 | CAAGCUCG | m6b | Created | no TS | -0.034000 |
-0.470000 |
|
hsa-miR-99b-3p |
attgctgaGAGCTTatagg |
0 | CAAGCUCG | m6b | Created | no TS | -0.024000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22528462C>T | COSN5367037 | RK169_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4671-5p |
aaaacTCTTCGGaataaag |
0 | ACCGAAGA | m7b | Disrupted | -0.332000 | -0.172000 |
0.150000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22528804A>G | ICGC_92B7352C-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4530 |
caaagTGCTGGGattacag |
0 | CCCAGCAG | m7a | Created | -0.418 | -0.418 | No effect | |
hsa-miR-4733-5p |
caaagtgcTGGGATTacag |
0 | AAUCCCAA | m7a | Created | NA | NA |
-0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22529225A>G | COSN9025251 | 8057646 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4491 |
tgagTCCACATcgctcgct |
4 |
AAUGUGGA | m7b | Disrupted | 0.133000 | 0.039000 |
-0.250000 |
|
hsa-miR-4657 |
tgagTCCACATcgctcgct |
4 |
AAUGUGGA | m7b | Disrupted | 0.170000 | 0.048000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.22530108T>C | COSN6446209 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-let-7a-2-3p |
aaccaTGTACAGagtgggc |
0 | CUGUACAG | m7a | Created | NA | NA |
-0.350000 |
|
hsa-let-7a-3p |
aaccaTGTATAGagtgggc |
0 | CUAUACAA | m7a | Disrupted | 0.018000 | 0.018000 |
0.010000 |
|
hsa-let-7b-3p |
aaccaTGTATAGagtgggc |
0 | CUAUACAA | m7a | Disrupted | 0.021000 | 0.021000 |
0.660000 |
|
hsa-let-7f-1-3p |
aaccaTGTATAGagtgggc |
0 | CUAUACAA | m7a | Disrupted | 0.021000 | 0.021000 |
0.050000 |
|
hsa-let-7f-2-3p |
aaccaTGTATAGagtgggc |
0 | CUAUACAG | m7a | Disrupted | -0.101000 | -0.101000 |
0.010000 |
|
hsa-let-7g-3p |
aaccaTGTACAGagtgggc |
0 | CUGUACAG | m7a | Created | NA | NA | No effect | |
hsa-miR-1284 |
aaccaTGTATAGAgtgggc |
1 |
UCUAUACA | m8a | Disrupted | 0.037000 | no TS |
0.040000 |
|
hsa-miR-3664-5p |
aaccatgtACAGAGTgggc |
0 | AACUCUGU | m7b | Created | no TS | 0.036000 | No effect | |
hsa-miR-4666a-5p |
aacCATGTATagagtgggc |
0 | AUACAUGU | m7a | (m7a->m6a) | NA | NA | No effect | |
hsa-miR-493-5p |
aaccATGTACAgagtgggc |
0 | UUGUACAU | m7b | Created | 0.144000 | 0.235000 |
-0.160000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.22530465C>A | COSN7207021 | 8016470 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-186-3p |
ctgtctgtaCTTTGGGgac |
6 |
GCCCAAAG | m7b | (m7b->m6c) | 0.163000 | 0.233000 |
0.050000 |
hsa-miR-3973 |
ctgtctgTACTTTGgggac |
8 |
ACAAAGUA | m7b | Disrupted | 0.007000 | -0.050000 |
0.230000 |
hsa-miR-548av-5p |
ctgtctGTACTTTggggac |
9 |
AAAAGUAC | m7b | Disrupted | -0.143000 | -0.174000 |
0.080000 |
hsa-miR-548k |
ctgtctGTACTTTggggac |
9 |
AAAAGUAC | m7b | Disrupted | -0.143000 | -0.174000 |
0.010000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
22526648 | rs2281354 | G | G |
hsa-miR-6089 |
3 |
tgctgCGGCCTCt |
Disrupted |
N |
-0.223 |
A |
hsa-miR-103a-3p hsa-miR-107 hsa-miR-1184 hsa-miR-485-5p hsa-miR-6884-5p |
2 2 2 3 3 |
TGCTGCAgcctct TGCTGCAgcctct tGCTGCAGcctct tgctgCAGCCTCt tgctgCAGCCTCt |
Created Created Created Created Created |
N N N N N |
-0.079 -0.079 -0.108 -0.112 -0.121 |
|||
22528882 | rs146102798 | T | C |
hsa-miR-4671-5p |
0 |
ttTCTTCGGAatc |
Created |
N |
-0.172 |
22529321 | rs41307777 | G | |||||||
A |
hsa-miR-186-3p hsa-miR-4733-5p |
2 2 |
TTTGGGAtggtgt tTTGGGATggtgt |
Created Created |
N N |
0.005 0.077 |