SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
	Home	Search	Help	Download

Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_006048
Gene Symbol:	UBE4B
Description:	Homo sapiens ubiquitination factor E4B (UBE4B), transcript variant 1, mRNA.
Gene Location:	chr1(+):10093040-10241296
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr1:g.10180266C>T			COSN1395799		RK166_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-181c-3p	tagtGATGGTTaatgggtc	0	AACCAUCG	m7a	Created	NA	NA	-1.860000

Mutation			Mutation ID		Sample Name		Cancer Type
chr1:g.10180482G>A			9_24169		CRC-4-Tumor		Colorectal adenocarcinoma
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1285-5p	attctGTGAGATaactgtg	24	GAUCUCAC	m7b	Disrupted	-0.229	no TS	11.16
hsa-miR-205-3p	attctgTGAAATaactgtg	24	GAUUUCAG	m6b	Created	no TS	0.049	-0.26
hsa-miR-27a-3p	attCTGTGAAataactgtg	26	UUCACAGU	m7a	(m6a->m7a)	no TS	-0.086	-0.36
hsa-miR-27b-3p	attCTGTGAAataactgtg	26	UUCACAGU	m7a	(m6a->m7a)	no TS	-0.086	-0.03
hsa-miR-342-3p	attcTGTGAGAtaactgtg	24	UCUCACAC	m7a	Disrupted	-0.237	-0.146	No effect
hsa-miR-513a-5p	attCTGTGAAataactgtg	26	UUCACAGG	m7a	(m6a->m7a)	no TS	-0.089	-0.46

Mutation			Mutation ID		Sample Name		Cancer Type
chr1:g.10180556A>T			COSN15081048		SM-4B296		[oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser