SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001105562 |
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Gene Symbol: | UBE4B |
Description: | Homo sapiens ubiquitination factor E4B (UBE4B), transcript variant 1, mRNA. |
Gene Location: | chr1(+):10093040-10241296 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.10180266C>T | COSN1395799 | RK166_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-181c-3p |
tagtGATGGTTaatgggtc |
0 | AACCAUCG | m7a | Created | NA | NA |
-1.860000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.10180482G>A | 9_24169 | CRC-4-Tumor | Colorectal adenocarcinoma | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1285-5p |
attctGTGAGATaactgtg |
24 |
GAUCUCAC | m7b | Disrupted | -0.229 | no TS |
11.16 |
hsa-miR-205-3p |
attctgTGAAATaactgtg |
24 |
GAUUUCAG | m6b | Created | no TS | 0.049 |
-0.26 |
hsa-miR-27a-3p |
attCTGTGAAataactgtg |
26 |
UUCACAGU | m7a | (m6a->m7a) | no TS | -0.086 |
-0.36 |
hsa-miR-27b-3p |
attCTGTGAAataactgtg |
26 |
UUCACAGU | m7a | (m6a->m7a) | no TS | -0.086 |
-0.03 |
hsa-miR-342-3p |
attcTGTGAGAtaactgtg |
24 |
UCUCACAC | m7a | Disrupted | -0.237 | -0.146 | No effect |
hsa-miR-513a-5p |
attCTGTGAAataactgtg |
26 |
UUCACAGG | m7a | (m6a->m7a) | no TS | -0.089 |
-0.46 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.10180556A>T | COSN15081048 | SM-4B296 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |