SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_020648
Gene Symbol: TWSG1
Description: Homo sapiens twisted gastrulation homolog 1 (Drosophila) (TWSG1), mRNA.
Gene Location: chr18(+):9334764-9402418
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr18:g.9401359G>A COSN1210298 HX14T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3136-5p tgttttTCAGTCAtttcct
 2
 CUGACUGA m7b Disrupted -0.105000 no TS 0.040000
hsa-miR-4439 tgttttTCAGTCAtttcct
 2
 GUGACUGA m7b Disrupted -0.105000 no TS No effect
hsa-miR-4513 tgttttTCAGTCatttcct
 2
 AGACUGAC m6b Disrupted -0.054000 no TS 8.140000
hsa-miR-3136-5p tgttttTCAGTCAtttcct
 2
 CUGACUGA m7b Disrupted -0.105 no TS 0.04
hsa-miR-4439 tgttttTCAGTCAtttcct
 2
 GUGACUGA m7b Disrupted -0.105 no TS No effect
hsa-miR-4513 tgttttTCAGTCatttcct
 2
 AGACUGAC m6b Disrupted -0.054 no TS 8.14

Mutation Mutation ID Sample Name Cancer Type
chr18:g.9401835T>G COSN7353303 8032817 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-186-5p taaaaATTCTTTtttcttt
 4
 CAAAGAAU m7b Disrupted -0.084000 no TS 0.010000
hsa-miR-548ad taaaaatTCGTTTTtcttt
 0 GAAAACGA m7b Created no TS -0.188000 -0.060000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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