| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
| Home | Search | Help | Download | |||||
| RefSeq ID: | NM_018259 |
|---|---|
| Gene Symbol: | TTC17 |
| Description: | Homo sapiens tetratricopeptide repeat domain 17 (TTC17), mRNA. |
| Gene Location: | chr11(+):43380434-43516483 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.43493979C>T | COSN1534785 | RK006_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3660 |
aatcatTGTCAGTatctac |
0 | ACUGACAG | m7a | Disrupted | NA | NA | No effect |
| hsa-miR-888-3p |
aatcatTGTCAGTatctac |
8 |
GACUGACA | m7b | Disrupted | -0.464000 | no TS |
0.230000 |
| hsa-miR-3660 |
aatcatTGTCAGTatctac |
0 | ACUGACAG | m7a | Disrupted | NA | NA | No effect |
| hsa-miR-888-3p |
aatcatTGTCAGTatctac |
8 |
GACUGACA | m7b | Disrupted | -0.464000 | no TS |
0.230000 |
| hsa-miR-3660 |
aatcatTGTCAGTatctac |
0 | ACUGACAG | m7a | Disrupted | NA | NA | No effect |
| hsa-miR-888-3p |
aatcatTGTCAGTatctac |
8 |
GACUGACA | m7b | Disrupted | -0.464 | no TS |
0.23 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.43494215C>A | COSN8954756 | SS6003149 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1256 |
cctCAATGCCTttagggct |
3 |
AGGCAUUG | m8a | Disrupted | -0.173000 | no TS |
0.580000 |
| hsa-miR-33a-5p |
cctCAATGCAtttagggct |
0 | GUGCAUUG | m7b | (m6b->m7b) | no TS | -0.147000 |
-3.220000 |
| hsa-miR-33b-5p |
cctCAATGCAtttagggct |
0 | GUGCAUUG | m7b | (m6b->m7b) | no TS | -0.147000 |
-7.320000 |
| hsa-miR-3910 |
cctcaATGCCTTTagggct |
7 |
AAAGGCAU | m8a | Disrupted | -0.105000 | no TS |
2.750000 |
| hsa-miR-4484 |
cctcaatGCCTTTagggct |
10 |
AAAAGGCG | m6b | Disrupted | -0.093000 | no TS |
11.380000 |
| hsa-miR-4509 |
cctcaatgCCTTTAGggct |
10 |
ACUAAAGG | m7b | Disrupted | -0.101000 | no TS |
7.870000 |
| hsa-miR-5009-3p |
cctcaatgcATTTAGGgct |
0 | UCCUAAAU | m7b | (m6c->m7b) | no TS | -0.016000 |
-2.880000 |
| hsa-miR-548an |
cctcaaTGCCTTTagggct |
7 |
AAAAGGCA | m7b | Disrupted | -0.295000 | no TS |
4.990000 |
| hsa-miR-5700 |
cctcaATGCATTtagggct |
0 | UAAUGCAU | m7b | Created | no TS | -0.084000 |
-3.380000 |
| hsa-miR-586 |
cctcAATGCATttagggct |
0 | UAUGCAUU | m7b | Created | no TS | -0.110000 |
-2.350000 |