SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_025265
Gene Symbol: TSEN2
Description: Homo sapiens tRNA splicing endonuclease 2 homolog (S. cerevisiae) (TSEN2), transcript variant 2, mRNA.
Gene Location: chr3(+):12526009-12574820
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.12532784C>A COSN8315967 TCGA-AN-A046-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3133 taaaaaGTTCTTTttgttg
 1
 UAAAGAAC m7b Disrupted -0.160000 no TS 4.466000
hsa-miR-4511 taaaaAGTTCTTtttgttg
 1
 GAAGAACU m7b Disrupted -0.214000 no TS 6.920000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.12532875A>G COSN1912327 RK019_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-19a-3p agataaaTTGCACAaggga
 0 UGUGCAAA m7a Created no TS -0.134000 -5.080000
hsa-miR-19b-3p agataaaTTGCACAaggga
 0 UGUGCAAA m7a Created no TS -0.134000 -5.550000
hsa-miR-581 agataaattACACAAGgga
 1
 UCUUGUGU m7b (m7b->m6c) -0.191000 no TS 0.010000
hsa-miR-19a-3p agataaaTTGCACAaggga
 0 UGUGCAAA m7a Created no TS -0.134000 -5.080000
hsa-miR-19b-3p agataaaTTGCACAaggga
 0 UGUGCAAA m7a Created no TS -0.134000 -5.550000
hsa-miR-581 agataaattACACAAGgga
 1
 UCUUGUGU m7b (m7b->m6c) -0.191000 no TS 0.010000
hsa-miR-19a-3p agataaaTTGCACAaggga
 0 UGUGCAAA m7a Created no TS -0.134 -5.08
hsa-miR-19b-3p agataaaTTGCACAaggga
 0 UGUGCAAA m7a Created no TS -0.134 -5.55
hsa-miR-581 agataaattACACAAGgga
 0 UCUUGUGU m7b (m7b->m6c) -0.191 no TS 0.01

Mutation Mutation ID Sample Name Cancer Type
chr3:g.12533086T>A COSN5519655 RK088_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4495 tagTTTACATTtatacagt
 4
 AAUGUAAA m8a Disrupted -0.085000 no TS 0.030000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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