SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001126242
Gene Symbol: TP73
Description: Homo sapiens tumor protein p73 (TP73), transcript variant 2, mRNA.
Gene Location: chr1(+):3607235-3652765
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.3733327G>T ICGC_ssm_v3_743 BN02T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3943 ttgtggggcGGGGGCTggc
 0 UAGCCCCC m7b (m7b->m6c) -0.357 -0.266 No effect
hsa-miR-4323 ttgtggggcTGGGGCTGgc
 0 CAGCCCCA m8a (m7b->m8a) no TS -0.114 -0.12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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