SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001114978 |
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Gene Symbol: | TP63 |
Description: | Homo sapiens tumor protein p63 (TP63), transcript variant 2, mRNA. |
Gene Location: | chr3(+):189349215-189615068 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189894239C>T | ICGC_1321265 | TCGA-AP-A0LM-01A-11D-A122-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189894246C>T | ICGC_1321267 | TCGA-B5-A11G-01A-13D-A122-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4717-3p |
ttcgaCATGTGatctggaa |
0 | ACACAUGG | m6b | Created | -0.423 | -0.517 |
-0.13 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189894247G>A | ICGC_1321268 | TCGA-D1-A17Q-01A-11D-A12J-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4666b |
tcgACATGCAAtctggaag |
0 | UUGCAUGU | m8a | Created | -0.402 | -0.734 |
-2.03 |
hsa-miR-5011-3p |
tcgaCATGCAatctggaag |
0 | GUGCAUGG | m6b | Created | -0.259 | -0.386 |
-0.1 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189894368C>T | ICGC_1321269 | TCGA-AP-A051-01A-21W-A027-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-329 |
cggggtgaGTGTGTTattg |
0 | AACACACC | m7a | Created | -0.049 | -0.049 |
-0.02 |
hsa-miR-362-3p |
cggggtgaGTGTGTTattg |
0 | AACACACC | m7a | Created | -0.059 | -0.059 |
-0.02 |
hsa-miR-574-3p |
cggggTGAGCGTGttattg |
0 | CACGCUCA | m8a | Disrupted | -0.199 | no TS |
1.74 |
hsa-miR-603 |
cggggtgAGTGTGTtattg |
0 | CACACACU | m7b | Created | -0.144 | -0.228 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189894498A>G | ICGC_sm392255 | RK099_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4640-3p |
aggaggGGGGGTGagcctc |
0 | CACCCCCU | m7a | Created | NA | NA |
2.81 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189894871G>A | COSN5147635 | PD4107a | [breast][NS][carcinoma][ductal_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189896146C>T | COSN6573408 | ICGC_MB110 | [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4780 |
cattctggTCAAGGGctgt |
2 |
ACCCUUGA | m7b | Disrupted | -0.025000 | no TS |
0.780000 |
hsa-miR-938 |
cattctggtTAAGGGCtgt |
0 | UGCCCUUA | m7b | (m6c->m7b) | -0.158000 | -0.266000 |
-2.510000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189896203C>T | COSN1937742 | RK052_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-193a-3p |
aagGGCCAGTgtggctcta |
0 | AACUGGCC | m7b | (m6b->m7b) | no TS | -0.083000 |
-0.010000 |
hsa-miR-193b-3p |
aagGGCCAGTgtggctcta |
0 | AACUGGCC | m7b | (m6b->m7b) | no TS | -0.102000 | No effect |
hsa-miR-449b-3p |
aagggccagTGTGGCTcta |
0 | CAGCCACA | m7b | (m6c->m7b) | no TS | -0.097000 |
-2.410000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189896847C>T | COSN1937743 | RK141_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-140-5p |
tagaAACCACTagaaagtg |
2 |
CAGUGGUU | m7b | Disrupted | -0.355000 | -0.060000 |
0.210000 |
hsa-miR-4263 |
tagaaaccaTTAGAAagtg |
0 | AUUCUAAG | m6b | Created | no TS | 0.050000 |
-0.640000 |
hsa-miR-4460 |
tagaaACCACTAgaaagtg |
2 |
AUAGUGGU | m7b | Disrupted | -0.205000 | no TS |
0.340000 |
hsa-miR-576-5p |
tagaaaccATTAGAAagtg |
0 | AUUCUAAU | m7b | Created | no TS | 0.022000 |
-0.240000 |
hsa-miR-140-5p |
tagaAACCACTagaaagtg |
2 |
CAGUGGUU | m7b | Disrupted | -0.355 | -0.06 |
0.21 |
hsa-miR-4263 |
tagaaaccaTTAGAAagtg |
0 | AUUCUAAG | m6b | Created | no TS | 0.05 |
-0.64 |
hsa-miR-4460 |
tagaaACCACTAgaaagtg |
2 |
AUAGUGGU | m7b | Disrupted | -0.205 | no TS |
0.34 |
hsa-miR-576-5p |
tagaaaccATTAGAAagtg |
0 | AUUCUAAU | m7b | Created | no TS | 0.022 |
-0.24 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.189897094A>G | COSN5531014 | RK125_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1323 |
aaaAGTTTTGtatgcttta |
3 |
UCAAAACU | m7b | (m6b->m7b) | -0.058000 | -0.262000 |
-0.080000 |
hsa-miR-548o-3p |
aaaAGTTTTGtatgcttta |
3 |
CCAAAACU | m7b | (m6b->m7b) | -0.040000 | -0.226000 |
-3.020000 |
hsa-miR-5582-3p |
aaAAGTTTTAtatgcttta |
8 |
UAAAACUU | m8a | (m8a->m7a) | 0.065000 | 0.142000 | No effect |
hsa-miR-5689 |
aaaagtttTGTATGCTtta |
0 | AGCAUACA | m8a | Created | no TS | -0.298000 |
-0.020000 |