SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001162501 |
---|---|
Gene Symbol: | TNRC6B |
Description: | Homo sapiens trinucleotide repeat containing 6B (TNRC6B), transcript variant 3, mRNA. |
Gene Location: | chr22(+):40573928-40731812 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40323328C>T | COSN10030680 | C0061T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-137 |
ttcaacttGCAATAAatac |
20 |
UUAUUGCU | m7a | Disrupted | -0.130000 | no TS | No effect | |
hsa-miR-25-3p |
ttcaactTGCAATaaatac |
20 |
CAUUGCAC | m6b | Disrupted | -0.125000 | no TS | No effect | |
hsa-miR-32-5p |
ttcaactTGCAATAaatac |
20 |
UAUUGCAC | m7a | Disrupted | -0.128000 | no TS | No effect | |
hsa-miR-363-3p |
ttcaactTGCAATaaatac |
20 |
AAUUGCAC | m6b | Disrupted | -0.121000 | no TS | No effect | |
hsa-miR-367-3p |
ttcaactTGCAATaaatac |
20 |
AAUUGCAC | m6b | Disrupted | -0.128000 | no TS | No effect | |
hsa-miR-556-3p |
ttcaacttGTAATAaatac |
2 |
AUAUUACC | m6b | Created | 0.131000 | 0.054000 | No effect | |
hsa-miR-92a-3p |
ttcaactTGCAATAaatac |
20 |
UAUUGCAC | m7a | Disrupted | -0.125000 | no TS | No effect | |
hsa-miR-92b-3p |
ttcaactTGCAATAaatac |
20 |
UAUUGCAC | m7a | Disrupted | -0.121000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40323892C>T | COSN1262157 | HCC85T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4643 |
gtgtgtgCATGTGTgttca |
2 |
GACACAUG | m7b | Created | 0.073000 | 0.078000 |
-0.010000 |
|
hsa-miR-4643 |
gtgtgtgCATGTGTgttca |
0 | GACACAUG | m7b | Created | 0.073 | 0.078 |
-3.05 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40324588G>T | COSN5455986 | RK040_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1253 |
actcccTCTTCTCctttct |
5 |
AGAGAAGA | m7b | Created | 0.200000 | 0.296000 | No effect | |
hsa-miR-2467-3p |
actcCCTCTGCTcctttct |
1 |
AGCAGAGG | m8a | Disrupted | -0.078000 | -0.100000 |
0.180000 |
|
hsa-miR-4428 |
actccctctTCTCCTTtct |
1 |
CAAGGAGA | m7b | (m6c->m7b) | 0.156000 | 0.209000 | No effect | |
hsa-miR-4434 |
actccctCTTCTCCTttct |
0 | AGGAGAAG | m8a | Created | 0.158000 | 0.141000 |
-0.150000 |
|
hsa-miR-4468 |
actcccTCTGCTCctttct |
5 |
AGAGCAGA | m7b | Disrupted | 0.024000 | -0.023000 | No effect | |
hsa-miR-4516 |
actccctCTTCTCCtttct |
0 | GGGAGAAG | m7b | Created | 0.195000 | 0.215000 | No effect | |
hsa-miR-5197-3p |
actccCTCTTCTcctttct |
4 |
AAGAAGAG | m7b | Created | 0.482000 | 0.586000 |
-0.010000 |
|
hsa-miR-5703 |
actccctCTTCTCCTttct |
0 | AGGAGAAG | m8a | Created | 0.117000 | 0.128000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40324701G>A | COSN8612740 | 4000_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4635 |
gtaCTTCAAGcgtttcctt |
15 |
UCUUGAAG | m7b | (m7b->m6b) | 0.191000 | 0.147000 |
0.010000 |
|
hsa-miR-5707 |
gtactTCAAACGTttcctt |
0 | ACGUUUGA | m8a | Created | no TS | -0.106000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40325351G>A | COSN8018995 | 8047815 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1323 |
catttcagtAGTTTTGtga |
9 |
UCAAAACU | m7b | (m6c->m7b) | 0.539000 | 0.623000 |
-0.460000 |
|
hsa-miR-181a-2-3p |
cattTCAGTGGTtttgtga |
2 |
ACCACUGA | m8a | Disrupted | -0.164000 | -0.078000 |
2.790000 |
|
hsa-miR-497-3p |
catttcaGTGGTTTtgtga |
17 |
CAAACCAC | m7b | Disrupted | 0.122000 | 0.102000 |
0.010000 |
|
hsa-miR-548aa |
catttcagTGGTTTTgtga |
7 |
AAAAACCA | m7b | Disrupted | 0.349000 | 0.201000 |
0.020000 |
|
hsa-miR-548ap-3p |
catttcagTGGTTTTgtga |
7 |
AAAAACCA | m7b | Disrupted | 0.349000 | 0.201000 |
0.610000 |
|
hsa-miR-548o-3p |
catttcagtAGTTTTGtga |
9 |
CCAAAACU | m7b | (m6c->m7b) | 0.560000 | 0.681000 |
-0.020000 |
|
hsa-miR-548t-3p |
catttcagTGGTTTTgtga |
7 |
AAAAACCA | m7b | Disrupted | 0.349000 | 0.201000 |
0.020000 |
|
hsa-miR-606 |
catttcAGTAGTTTtgtga |
2 |
AAACUACU | m8a | Created | 0.007000 | 0.021000 |
-0.360000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40325390C>G | COSN8018996 | 8034061 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3154 |
gtagCCCTTCTGgcttacc |
0 | CAGAAGGG | m8a | Disrupted | -0.029000 | -0.087000 | No effect | |
hsa-miR-4457 |
gtagcCCTTGTGgcttacc |
0 | UCACAAGG | m7b | Created | 0.051000 | 0.118000 | No effect | |
hsa-miR-449b-3p |
gtagccctTGTGGCTtacc |
3 |
CAGCCACA | m7b | Created | -0.117000 | -0.139000 |
-0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40325655G>A | COSN1262158 | HX4T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4672 |
tctCTGTGTAgagcaaagt |
12 |
UUACACAG | m7b | (m6b->m7b) | 0.239000 | 0.334000 |
-0.010000 |
|
hsa-miR-5691 |
tctctgtgtAGAGCAAagt |
1 |
UUGCUCUG | m7a | (m6b->m7a) | -0.001000 | 0.061000 | No effect | |
hsa-miR-4672 |
tctCTGTGTAgagcaaagt |
0 | UUACACAG | m7b | (m6b->m7b) | 0.239 | 0.334 |
-0.01 |
|
hsa-miR-5691 |
tctctgtgtAGAGCAAagt |
0 | UUGCUCUG | m7a | (m6b->m7a) | -0.001 | 0.061 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40326582C>T | COSN5992757 | RK199_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3175 |
ctgaaaTCTCCCCtagtaa |
0 | CGGGGAGA | m7b | Disrupted | -0.342000 | -0.190000 |
0.010000 |
|
hsa-miR-4699-5p |
ctgaAATCTTCcctagtaa |
0 | AGAAGAUU | m7b | Created | no TS | 0.044000 |
-0.160000 |
|
hsa-miR-4747-5p |
ctgaaatCTTCCCTagtaa |
8 |
AGGGAAGG | m7a | Created | 0.062000 | 0.062000 |
-0.080000 |
|
hsa-miR-5196-5p |
ctgaaatCTTCCCTagtaa |
8 |
AGGGAAGG | m7a | Created | 0.051000 | 0.051000 | No effect | |
hsa-miR-5584-5p |
ctgaaatcTTCCCTagtaa |
0 | CAGGGAAA | m6b | Created | 0.056000 | 0.062000 |
-0.780000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40327340A>G | COSN1899289 | RK007_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40327342A>G | COSN1899290 | RK100_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1206 |
aaaataaATGAACAaacgt |
18 |
UGUUCAUG | m7a | Created | -0.002000 | 0.035000 |
-0.010000 |
|
hsa-miR-4729 |
aaaATAAATGAacaaacgt |
21 |
UCAUUUAU | m8a | Created | 0.219000 | 0.434000 |
-0.040000 |
|
hsa-miR-5696 |
aaaaTAAATGAacaaacgt |
0 | CUCAUUUA | m7b | Created | no TS | 0.209000 |
-2.320000 |
|
hsa-miR-1206 |
aaaataaATGAACAaacgt |
0 | UGUUCAUG | m7a | Created | -0.002 | 0.035 |
-0.01 |
|
hsa-miR-4729 |
aaaATAAATGAacaaacgt |
0 | UCAUUUAU | m8a | Created | 0.219 | 0.434 |
-2.08 |
|
hsa-miR-5696 |
aaaaTAAATGAacaaacgt |
0 | CUCAUUUA | m7b | Created | no TS | 0.209 |
-8.54 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40327616T>A | COSN1899291 | RK051_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2116-5p |
gcagtgaccTAAGAACagg |
9 |
GGUUCUUA | m7b | (m7b->m6c) | 0.230000 | 0.130000 | No effect | |
hsa-miR-5587-5p |
gcaGTGACCAaagaacagg |
2 |
AUGGUCAC | m7b | (m6b->m7b) | 0.052000 | 0.014000 | No effect | |
hsa-miR-9-5p |
gcagtgACCAAAGAacagg |
16 |
UCUUUGGU | m8a | Created | 0.215000 | 0.337000 |
-0.470000 |
|
hsa-miR-2116-5p |
gcagtgaccTAAGAACagg |
0 | GGUUCUUA | m7b | (m7b->m6c) | 0.23 | 0.13 | No effect | |
hsa-miR-5587-5p |
gcaGTGACCAaagaacagg |
0 | AUGGUCAC | m7b | (m6b->m7b) | 0.052 | 0.014 | No effect | |
hsa-miR-9-5p |
gcagtgACCAAAGAacagg |
0 | UCUUUGGU | m8a | Created | 0.215 | 0.337 |
-0.47 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40328217T>A | COSN1262159 | HX17T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3920 |
ttTAATCAGTgtcccccca |
2 |
ACUGAUUA | m8a | (m8a->m7a) | 0.048000 | 0.095000 |
-0.350000 |
|
hsa-miR-4522 |
tttaatCAGAGTCccccca |
0 | UGACUCUG | m7b | Created | no TS | -0.041000 |
-0.650000 |
|
hsa-miR-4652-5p |
tttaatcagAGTCCCCcca |
5 |
AGGGGACU | m7b | (m6c->m7b) | -0.108000 | -0.206000 |
-0.020000 |
|
hsa-miR-4714-5p |
tttaaTCAGAGTcccccca |
0 | AACUCUGA | m7b | Created | 0.022000 | 0.010000 |
-1.270000 |
|
hsa-miR-3920 |
ttTAATCAGTgtcccccca |
0 | ACUGAUUA | m8a | (m8a->m7a) | 0.048 | 0.095 |
-0.35 |
|
hsa-miR-4522 |
tttaatCAGAGTCccccca |
0 | UGACUCUG | m7b | Created | no TS | -0.041 |
-0.65 |
|
hsa-miR-4652-5p |
tttaatcagAGTCCCCcca |
0 | AGGGGACU | m7b | (m6c->m7b) | -0.108 | -0.206 | No effect | |
hsa-miR-4714-5p |
tttaaTCAGAGTcccccca |
0 | AACUCUGA | m7b | Created | 0.022 | 0.01 |
-1.27 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40328282C>G | COSN5992758 | RK210_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4496 |
cttgaTTTCCTatgagtat |
0 | GAGGAAAC | m6b | Disrupted | 0.199000 | 0.116000 | No effect | |
hsa-miR-5093 |
cttgATTTCCTatgagtat |
6 |
AGGAAAUG | m7a | Disrupted | 0.375000 | 0.375000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40328517C>T | COSN8010737 | PCSI_0356_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5585-3p |
gcaaCTATTCActcatttt |
0 | CUGAAUAG | m7b | Disrupted | 0.053000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40328800T>A | COSN1899292 | RK126_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2116-5p |
tagaaAAGAACCatttttt |
9 |
GGUUCUUA | m7a | Created | 0.230000 | 0.230000 | No effect | |
hsa-miR-218-2-3p |
tagaaaaGAACCATttttt |
5 |
CAUGGUUC | m7b | Created | 0.022000 | -0.035000 | No effect | |
hsa-miR-224-3p |
tagaaaagaACCATTTTtt |
4 |
AAAAUGGU | m8a | (m7b->m8a) | -0.156000 | -0.113000 |
-0.070000 |
|
hsa-miR-4694-3p |
tagaaaagaTCCATTTttt |
0 | CAAAUGGA | m7b | (m7b->m6c) | 0.238000 | 0.190000 | No effect | |
hsa-miR-522-3p |
tagaaaagaACCATTTTtt |
4 |
AAAAUGGU | m8a | (m7b->m8a) | -0.166000 | -0.151000 |
-0.150000 |
|
hsa-miR-2116-5p |
tagaaAAGAACCatttttt |
0 | GGUUCUUA | m7a | Created | 0.23 | 0.23 | No effect | |
hsa-miR-218-2-3p |
tagaaaaGAACCATttttt |
0 | CAUGGUUC | m7b | Created | 0.022 | -0.035 | No effect | |
hsa-miR-224-3p |
tagaaaagaACCATTTTtt |
0 | AAAAUGGU | m8a | (m7b->m8a) | -0.156 | -0.113 |
-2.86 |
|
hsa-miR-4694-3p |
tagaaaagaTCCATTTttt |
0 | CAAAUGGA | m7b | (m7b->m6c) | 0.238 | 0.19 |
7.11 |
|
hsa-miR-522-3p |
tagaaaagaACCATTTTtt |
0 | AAAAUGGU | m8a | (m7b->m8a) | -0.166 | -0.151 |
-0.15 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40329032C>A | 0_598 | Melanoma | |||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40329291A>G | COSN5992759 | RK136_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-365a-3p |
ctattgaGGGCATTgtcat |
13 |
UAAUGCCC | m7b | Created | -0.020000 | -0.095000 | No effect | |
hsa-miR-365b-3p |
ctattgaGGGCATTgtcat |
13 |
UAAUGCCC | m7b | Created | -0.020000 | -0.095000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40329851C>T | COSN9166207 | AOCS-166-1-2 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1292 |
aatttaaatCGTTCCCttt |
2 |
UGGGAACG | m7b | (m7b->m6c) | -0.152000 | -0.026000 |
1.680000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40330834A>G | COSN8612741 | 202_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1247-3p |
ggaagTCCCGGGagcagct |
2 |
CCCCGGGA | m7b | Created | -0.064000 | -0.230000 |
-0.050000 |
|
hsa-miR-1343 |
ggaagtCCCAGGAGcagct |
1 |
CUCCUGGG | m8a | Disrupted | -0.011000 | -0.004000 | No effect | |
hsa-miR-4268 |
ggaagtcccAGGAGCagct |
9 |
GGCUCCUC | m6b | Disrupted | 0.002000 | 0.003000 | No effect | |
hsa-miR-4448 |
ggaagtcccAGGAGCagct |
9 |
GGCUCCUU | m6b | Disrupted | 0.011000 | 0.004000 |
-0.020000 |
|
hsa-miR-4532 |
ggaagtCCCGGGagcagct |
2 |
CCCCGGGG | m6b | Created | -0.069000 | -0.141000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40331227G>A | COSN10030681 | C0075T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3680-3p |
gctgttgATGCAAAcaggg |
9 |
UUUUGCAU | m7b | Disrupted | 0.707000 | 0.544000 | No effect | |
hsa-miR-4711-5p |
gctgtTGATGCAaacaggg |
2 |
UGCAUCAG | m7a | Disrupted | 0.016000 | -0.017000 |
0.010000 |
|
hsa-miR-557 |
gctgttgaTGCAAACaggg |
9 |
GUUUGCAC | m7a | Disrupted | 0.437000 | 0.437000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40331314A>G | COSN8997426 | 8051709 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4517 |
tctgaaaTCATATTTtatt |
11 |
AAAUAUGA | m8a | Disrupted | 0.165000 | 0.135000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40331424A>G | COSN1899293 | RK177_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40332118G>A | COSN9166208 | AOCS-165-1-X | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4310 |
gcttcactcATGCTGacct |
0 | GCAGCAUU | m6b | Created | 0.037000 | 0.093000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40332482A>G | COSN15590858 | C0026T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4684-3p |
ttatTTGCAACAcacagta |
0 | UGUUGCAA | m8a | Disrupted | -0.161000 | -0.169000 |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40332615C>T | COSN5771338 | HX33T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-143-5p |
tgtgcagggCTGCACaggc |
13 |
GGUGCAGU | m6b | Disrupted | -0.004000 | -0.048000 | No effect | |
hsa-miR-3173-5p |
tgtGCAGGGCtgcacaggc |
4 |
UGCCCUGC | m7b | (m7b->m6b) | -0.012000 | no TS | No effect | |
hsa-miR-3944-5p |
tgtgcaggGCTGCACAggc |
13 |
UGUGCAGC | m8a | Disrupted | -0.307000 | -0.312000 | No effect | |
hsa-miR-4690-3p |
tgtgcaGGGCTGCacaggc |
1 |
GCAGCCCA | m7a | Disrupted | -0.271000 | -0.271000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40333085A>T | ICGC_B36B1F86-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-125a-3p |
gctcaCACCTGTaatccca |
0 | ACAGGUGA | m7a | Created | NA | NA | No effect | |
hsa-miR-3934 |
gctcACACCTGtaatccca |
0 | UCAGGUGU | m7b | Created | no TS | 0.066 | No effect | |
hsa-miR-552 |
gctcaCACCTGTaatccca |
0 | AACAGGUG | m7b | Created | -0.085 | -0.031 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40333571A>C | TNRC6B_E21_UTR_3 | SJHYPO126_D | Hypodiploid_ALL | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1283 |
tcatTTTGTAGttcacaga |
0 | UCUACAAA | m7b | Disrupted | 0.072 | no TS |
0.01 |
|
hsa-miR-887 |
tcattttgtCGTTCACaga |
0 | GUGAACGG | m7a | (m6b->m7a) | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40333997G>T | COSN8612742 | 202_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-100-3p |
aaggaagAAGCTTGattat |
17 |
CAAGCUUG | m7a | Disrupted | 0.048000 | 0.048000 | No effect | |
hsa-miR-103a-2-5p |
aaggAAGAAGCTtgattat |
0 | AGCUUCUU | m8a | Disrupted | 0.264000 | 0.194000 | No effect | |
hsa-miR-4778-3p |
aagGAAGAAGcttgattat |
9 |
UCUUCUUC | m7b | (m7b->m6b) | 0.349000 | 0.276000 |
0.110000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40334160G>C | COSN8612743 | 4537_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-129-1-3p |
gctcccaAAGGGCTTtgct |
14 |
AAGCCCUU | m8a | Disrupted | -0.023000 | no TS | No effect | |
hsa-miR-129-2-3p |
gctcccaAAGGGCTTtgct |
14 |
AAGCCCUU | m8a | Disrupted | -0.023000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40334178C>T | COSN8010738 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2467-3p |
tgatCTCTGCacttctttc |
1 |
AGCAGAGG | m6b | Disrupted | -0.078000 | -0.120000 | No effect | |
hsa-miR-3678-3p |
tgatCTCTGCActtctttc |
3 |
CUGCAGAG | m7b | Disrupted | -0.087000 | -0.109000 |
-0.010000 |
|
hsa-miR-3919 |
tgaTCTCTGCacttctttc |
2 |
GCAGAGAA | m7a | (m7a->m6a) | 0.348000 | 0.348000 | No effect | |
hsa-miR-4797-5p |
tgatCTCTGTacttctttc |
3 |
GACAGAGU | m6b | Created | -0.011000 | 0.062000 | No effect | |
hsa-miR-519a-3p |
tgatctcTGCACTTctttc |
15 |
AAAGUGCA | m7b | Disrupted | 0.066000 | -0.025000 | No effect | |
hsa-miR-519b-3p |
tgatctcTGCACTTctttc |
15 |
AAAGUGCA | m7b | Disrupted | 0.066000 | -0.025000 | No effect | |
hsa-miR-519c-3p |
tgatctcTGCACTTctttc |
15 |
AAAGUGCA | m7b | Disrupted | 0.066000 | -0.025000 | No effect | |
hsa-miR-5585-5p |
tgatctctGTACTTCtttc |
17 |
UGAAGUAC | m7b | Created | -0.006000 | 0.037000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40335002T>- | ICGC_sm444574 | RK109_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2467-3p |
attgatgctCTCTGCaagt |
0 | AGCAGAGG | m6b | Disrupted | -0.078000 | -0.017000 | No effect | |
hsa-miR-298 |
attgatgCTTCTGCaagt |
0 | AGCAGAAG | m7b | Created | 0.334000 | 0.171000 | No effect | |
hsa-miR-3678-3p |
attgatgctCTCTGCAagt |
0 | CUGCAGAG | m7b | (m7b->m6c) | -0.087000 | 0.059000 | No effect | |
hsa-miR-3919 |
attgatgcTCTCTGCaagt |
0 | GCAGAGAA | m7a | Disrupted | 0.348000 | 0.348000 |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.40335016T>C | COSN5771339 | HX21T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-548ag |
caagTTACCTTTaagtgtt |
2 |
AAAGGUAA | m8a | Disrupted | -0.042000 | no TS | No effect | |
hsa-miR-548ai |
caagTTACCTTTaagtgtt |
2 |
AAAGGUAA | m8a | Disrupted | -0.089000 | no TS |
0.010000 |
|
hsa-miR-548m |
caagtTACCTTTaagtgtt |
3 |
CAAAGGUA | m7b | Disrupted | -0.022000 | 0.080000 |
0.010000 |
|
hsa-miR-570-5p |
caagTTACCTTTaagtgtt |
2 |
AAAGGUAA | m8a | Disrupted | -0.089000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.40335692T>G | COSN8612744 | 381_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-186-3p |
attttaTTTGGGaaagata |
1 |
GCCCAAAG | m6b | Created | 0.199000 | 0.054000 |
-0.010000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
40324291 | rs75472094 | T | |||||||
G |
hsa-miR-548aa hsa-miR-548ac hsa-miR-548ap-3p hsa-miR-548d-3p hsa-miR-548h-3p hsa-miR-548t-3p hsa-miR-548z |
0 |
tttcTGGTTTTtt tttctGGTTTTTt tttcTGGTTTTtt tttctGGTTTTTt tttctGGTTTTTt tttcTGGTTTTtt tttctGGTTTTTt |
Created Created Created Created Created Created Created |
N N N N N N N |
0.001 -0.004 0.001 0.024 0.006 0.001 0.006 |
|||
40324700 | rs41281265 | A | A |
hsa-miR-3616-5p hsa-miR-4635 hsa-miR-573 |
17 15 17 |
ACTTCAAgcgttt aCTTCAAGcgttt ACTTCAAgcgttt |
Disrupted Disrupted Disrupted |
N N N |
0.083 0.044 0.086 |
G |
hsa-miR-6078 hsa-miR-614 |
11 11 |
actTCAGGCGttt acttcAGGCGTTt |
Created Created |
N N |
-0.191 -0.091 |
|||
40325184 | rs140341933 | A | A |
hsa-miR-4797-5p |
3 |
CTCTGTAacttgc |
Disrupted |
N |
0.053 |
C |
hsa-miR-542-3p |
3 |
ctCTGTCACttgc |
Created |
N |
0.019 |
|||
40325350 | rs150375767 | T | T |
hsa-miR-181a-2-3p hsa-miR-497-3p hsa-miR-548aa hsa-miR-548ap-3p hsa-miR-548t-3p |
2 7 7 7 7 |
ttTCAGTGGtttt tttcaGTGGTTTt tttcagTGGTTTT tttcagTGGTTTT tttcagTGGTTTT |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.086 0.02 0.148 0.148 0.148 |
C |
hsa-miR-548at-3p hsa-miR-548ay-3p |
7 7 |
tttcagCGGTTTT tttcagCGGTTTT |
Created Created |
N N |
0.078 0.096 |
|||
40326619 | rs190843530 | C | C |
hsa-miR-4428 hsa-miR-4434 hsa-miR-4516 hsa-miR-5703 hsa-miR-6770-5p |
1 13 13 13 11 |
cctTCTCCTTgtc cCTTCTCCttgtc cCTTCTCCttgtc cCTTCTCCttgtc CCTTCTCcttgtc |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
0.069 0.057 0.057 0.066 0.021 |
T |
hsa-miR-3185 |
13 |
cCTTCTTCttgtc |
Created |
N |
0.097 |
|||
40326725 | rs181982707 | A | A |
hsa-miR-376a-5p hsa-miR-376c-3p |
13 14 |
GAATCTAtgtaaa gaaTCTATGTAaa |
Disrupted Disrupted |
N N |
0.035 0.011 |
C |
hsa-miR-4756-3p hsa-miR-4797-5p |
14 14 |
gaATCTCTGtaaa gaatCTCTGTAaa |
Created Created |
N N |
-0.006 0.017 |
|||
40326781 | rs186548735 | G | G |
hsa-miR-365a-3p hsa-miR-365b-3p |
13 13 |
atataGGCATTAc atataGGCATTAc |
Disrupted Disrupted |
N N |
-0.037 -0.037 |
A |
hsa-miR-4796-5p hsa-miR-513b-3p |
12 13 |
aTATAGACAttac atataGACATTAc |
Created Created |
N N |
-0.045 0.039 |
|||
40326844 | rs145785758 | G | G |
hsa-miR-495-3p hsa-miR-5688 |
4 4 |
acctccGTTTGTT acctccGTTTGTT |
Disrupted Disrupted |
N N |
0.17 0.132 |
A |
hsa-miR-3689d hsa-miR-4694-3p hsa-miR-4802-5p hsa-miR-6851-5p hsa-miR-7-1-3p hsa-miR-7-2-3p |
4 5 5 4 4 4 |
ACCTCCAtttgtt accTCCATTTgtt aCCTCCATttgtt ACCTCCAtttgtt acctccATTTGTT acctccATTTGTT |
Created Created Created Created Created Created |
N N N N N N |
-0.029 0.111 -0.115 -0.029 0.209 0.209 |
|||
40327231 | rs140994992 | - | TG |
hsa-miR-4643 |
1 |
acgcaCATGTGTgtg |
Unknown |
N |
0.001 |
- | |||||||||
40327849 | rs199665035 | T | T |
hsa-miR-5584-5p |
12 |
TTTCCCTtttttt |
Disrupted |
N |
-0.003 |
C |
hsa-miR-6783-5p |
13 |
tTTCCCCTttttt |
Created |
N |
-0.097 |
|||
40329020 | rs10707775 | - | A |
hsa-miR-129-5p hsa-miR-3680-3p hsa-miR-450b-5p hsa-miR-507 hsa-miR-557 hsa-miR-6516-5p |
1 9 9 9 9 10 |
tactGCAAAAAAa tacTGCAAAAaaa tacTGCAAAAaaa tacTGCAAAAaaa tacTGCAAAAaaa tACTGCAAAaaaa |
Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N |
-0.003 -0.002 -0.002 -0.002 -0.002 -0.003 |
- | |||||||||
40329071 | rs146054399 | T | T |
hsa-miR-3148 |
4 |
attgtgTTTTTCC |
Disrupted |
N |
0.185 |
G |
hsa-miR-497-3p hsa-miR-548aa hsa-miR-548ap-3p hsa-miR-548t-3p |
3 3 3 3 |
attGTGGTTTtcc attgTGGTTTTcc attgTGGTTTTcc attgTGGTTTTcc |
Created Created Created Created |
N N N N |
0.038 0.106 0.106 0.106 |
|||
40329574 | rs186432501 | C | C |
hsa-miR-1343-5p hsa-miR-202-3p hsa-miR-3150a-3p hsa-miR-3175 hsa-miR-6763-5p hsa-miR-6799-5p hsa-miR-6825-5p hsa-miR-939-5p |
7 3 7 7 7 3 6 7 |
ccatacCTCCCCA ccATACCTCccca ccatacCTCCCCA ccatacCTCCCCA ccatacCTCCCCA ccatACCTCCCca ccataCCTCCCCA ccatacCTCCCCA |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N |
0.004 0.121 0.041 -0.005 0.032 0.002 -0.096 No Change |
A |
hsa-miR-3171 hsa-miR-4450 hsa-miR-6857-5p |
3 7 7 |
ccATACATCccca ccatacATCCCCA ccatacATCCCCA |
Created Created Created |
N N N |
0.18 -0.007 0.064 |
|||
40329748 | rs186990745 | G | G |
hsa-miR-372-5p hsa-miR-606 hsa-miR-888-5p |
6 2 2 |
ATTTGAGtagttt atttgAGTAGTTt aTTTGAGTAgttt |
Disrupted Disrupted Disrupted |
N N N |
0.065 0.007 0.083 |
T |
hsa-miR-3129-3p hsa-miR-5583-5p |
2 2 |
atttgATTAGTTt atttgATTAGTTt |
Created Created |
N N |
0.097 0.069 |
|||
40329948 | rs35459648 | - | - |
hsa-miR-129-5p hsa-miR-3680-3p hsa-miR-450b-5p hsa-miR-507 hsa-miR-518a-5p hsa-miR-527 hsa-miR-548aw hsa-miR-557 |
2 2 2 2 2 2 2 2 |
tctttGCAAAAAg tcttTGCAAAAag tctTTGCAAAAag tcttTGCAAAAag tCTTTGCAAaaag tCTTTGCAAaaag tcTTTGCAAaaag tcttTGCAAAAag |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N |
0.15 0.087 0.15 0.086 0.061 0.061 0.108 0.09 |
C |
hsa-miR-1271-5p hsa-miR-182-5p hsa-miR-4470 hsa-miR-96-5p |
2 2 2 2 |
tcttTGCCAAAaag tctTTGCCAAAaag tcTTTGCCAaaaag tcttTGCCAAAaag |
Unknown Unknown Unknown Unknown |
N N N N |
0.032 0.046 0.038 0.025 |
|||
40330179 | rs139919 | T | T |
hsa-miR-548aa hsa-miR-548ac hsa-miR-548ap-3p hsa-miR-548d-3p hsa-miR-548h-3p hsa-miR-548t-3p hsa-miR-548z |
1 1 1 1 1 1 1 |
ggaTGGTTTTtgt ggatGGTTTTTgt ggaTGGTTTTtgt ggatGGTTTTTgt ggatGGTTTTTgt ggaTGGTTTTtgt ggatGGTTTTTgt |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
0.047 0.076 0.047 0.086 0.067 0.047 0.067 |
40330225 | rs142296906 | G | G |
hsa-miR-4468 hsa-miR-545-5p |
3 4 |
tttaCTGCTCAca TTTACTGctcaca |
Disrupted Disrupted |
N N |
-0.014 0.104 |
T |
hsa-miR-1253 hsa-miR-548ao-5p hsa-miR-548ax hsa-miR-6770-5p |
3 4 4 3 |
tttaCTTCTCAca tTTACTTCtcaca tTTACTTCtcaca tttaCTTCTCAca |
Created Created Created Created |
N N N N |
0.053 0.044 0.044 0.058 |
|||
40330273 | rs183337879 | G | G |
hsa-miR-3529-3p |
3 |
gatgcTGTTGTAg |
Disrupted |
N |
0.106 |
T |
hsa-miR-1283 hsa-miR-4422 hsa-miR-548e-5p |
5 1 1 |
gatgctTTTGTAG gATGCTTTtgtag gaTGCTTTTgtag |
Created Created Created |
N N N |
0.111 0.104 0.125 |
|||
40330758 | rs139921 | G | A |
hsa-miR-103a-2-5p hsa-miR-4778-3p hsa-miR-6875-3p |
3 4 4 |
ggAAGAAGCtatc gGAAGAAGctatc GGAAGAAgctatc |
Created Created Created |
N N N |
0.094 0.115 0.085 |
G |
hsa-miR-1236-3p hsa-miR-2682-3p hsa-miR-6781-3p hsa-miR-6819-3p hsa-miR-6877-3p hsa-miR-877-3p |
4 3 3 0 0 4 |
GGAAGAGgctatc ggAAGAGGCtatc ggAAGAGGCtatc ggaAGAGGCTAtc ggaAGAGGCTAtc gGAAGAGGctatc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
0.043 0.047 -0.009 -0.04 -0.04 0.067 |
|||
40330814 | rs187714041 | A | |||||||
G |
hsa-miR-301a-5p hsa-miR-345-5p hsa-miR-4680-5p hsa-miR-4714-5p |
1 1 1 1 |
aaGTCAGAGttcc aAGTCAGAgttcc aagtcAGAGTTCc aagTCAGAGTtcc |
Created Created Created Created |
N N N N |
No Change 0.06 0.096 0.063 |
|||
40331645 | rs138003976 | - | A |
hsa-miR-4668-3p hsa-miR-548c-3p |
12 12 |
tgttGGATTTTtt tgttgGATTTTTt |
Unknown Unknown |
N N |
0.014 0.146 |
- |
hsa-miR-548aa hsa-miR-548ac hsa-miR-548ap-3p hsa-miR-548d-3p hsa-miR-548h-3p hsa-miR-548t-3p hsa-miR-548z |
12 12 12 12 12 12 12 |
tgtTGGTTTTtt tgttGGTTTTTt tgtTGGTTTTtt tgttGGTTTTTt tgttGGTTTTTt tgtTGGTTTTtt tgttGGTTTTTt |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N |
0.001 0.029 0.001 0.01 0.029 0.001 0.029 |
|||
40332400 | rs13055089 | C | C |
hsa-miR-5197-3p |
3 |
cCTCTTCTttgtc |
Disrupted |
N |
0.113 |
40334137 | rs147609001 | A | A |
hsa-miR-300 hsa-miR-381-3p hsa-miR-624-3p |
1 1 1 |
cCTTGTATctctt cCTTGTATctctt CCTTGTAtctctt |
Disrupted Disrupted Disrupted |
N N N |
0.17 0.189 0.057 |
G |
hsa-miR-4457 hsa-miR-4731-3p hsa-miR-4801 |
1 1 1 |
CCTTGTGtctctt cCTTGTGTctctt cCTTGTGTctctt |
Created Created Created |
N N N |
0.09 0.154 0.145 |
|||
40334600 | rs185451024 | T | T |
hsa-miR-4729 hsa-miR-6083 |
8 6 |
gagatATAAATGc gaGATATAAAtgc |
Disrupted Disrupted |
N N |
0.138 0.15 |
C |
hsa-miR-3149 |
6 |
gagATACAAAtgc |
Created |
N |
0.104 |