SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001085429
Gene Symbol: TMEM213
Description: Homo sapiens transmembrane protein 213 (TMEM213), mRNA.
Gene Location: chr7(+):138482738-138490769
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.138803178C>T COSN5096690 HX23T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-127-5p acctttaAGCTTCAGttac
 4
 CUGAAGCU m8a Disrupted -0.259000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr7:g.138803416C>A COSN6353876 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1253 gtgcataacCTTCTCacca
 3
 AGAGAAGA m6b Disrupted -0.063000 no TS 0.030000
hsa-miR-154-5p gtgcATAACCTtctcacca
 1
 UAGGUUAU m7b Disrupted -0.102000 no TS 0.040000
hsa-miR-580 gtgcataacATTCTCAcca
 0 UUGAGAAU m7b (m6c->m7b) no TS -0.052000 -1.120000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.138803998C>A 0_300 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3170 cttcACCCCAacctcaggt
 7
 CUGGGGUU m6b Created no TS -0.069 -0.67
hsa-miR-377-5p cttcacccCAACCTCaggt
 0 AGAGGUUG m7b Created no TS -0.066 -11.53
hsa-miR-4447 cttcaCCCCCACCtcaggt
 4
 GGUGGGGG m8a Disrupted -0.126 no TS 5.93
hsa-miR-4472 cttcaCCCCCACCtcaggt
 4
 GGUGGGGG m8a Disrupted -0.126 no TS 7.08
hsa-miR-4664-5p cttCACCCCAacctcaggt
 7
 UGGGGUGC m7a (m6a->m7a) no TS -0.085 -0.05
hsa-miR-5572 cttcACCCCAACctcaggt
 4
 GUUGGGGU m8a Created no TS -0.038 -2.18
hsa-miR-92a-1-5p cttcacCCCAACCTcaggt
 0 AGGUUGGG m8a Created no TS -0.075 -0.99
hsa-miR-92a-2-5p cttcacCCCCACCtcaggt
 6
 GGGUGGGG m7b Disrupted -0.154 -0.073 4.65

Mutation Mutation ID Sample Name Cancer Type
chr7:g.138804876C>A COSN2204753 RK067_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1244 aaaatgACTACTTatgaag
 0 AAGUAGUU m7a Created NA NA -0.100000
hsa-miR-3173-3p aaaatgaCTCCTTatgaag
 2
 AAAGGAGG m6b Disrupted 0.008000 no TS No effect
hsa-miR-4428 aaaatgaCTCCTTatgaag
 2
 CAAGGAGA m6b Disrupted 0.071000 0.060000 No effect
hsa-miR-562 aaaatgaCTACTTatgaag
 2
 AAAGUAGC m6b Created -0.037000 -0.016000 No effect
hsa-miR-1244 aaaatgACTACTTatgaag
 0 AAGUAGUU m7a Created NA NA -0.1
hsa-miR-3173-3p aaaatgaCTCCTTatgaag
 2
 AAAGGAGG m6b Disrupted 0.008 no TS No effect
hsa-miR-4428 aaaatgaCTCCTTatgaag
 2
 CAAGGAGA m6b Disrupted 0.071 0.06 No effect
hsa-miR-562 aaaatgaCTACTTatgaag
 0 AAAGUAGC m6b Created -0.037 -0.016 No effect

Mutation Mutation ID Sample Name Cancer Type
chr7:g.138804895C>T COSN9832089 AOCS-160-1-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-124-3p cattttGTGCCTTctgtga
 0 UAAGGCAC m7b Disrupted -0.113000 no TS No effect
hsa-miR-506-3p cattttGTGCCTTctgtga
 0 UAAGGCAC m7b Disrupted -0.103000 no TS No effect
hsa-miR-5582-5p catttTGTGCCTtctgtga
 0 UAGGCACA m7b Disrupted -0.125000 no TS 0.060000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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