SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001127266
Gene Symbol: TMEM129
Description: Homo sapiens transmembrane protein 129 (TMEM129), transcript variant 1, mRNA.
Gene Location: chr4(-):1717678-1723084
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.1716360C>A COSN6813404 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1268a gatgCACGCCCcctgtggt
 2
 CGGGCGUG m7b Disrupted -0.149000 no TS 0.010000
hsa-miR-1268b gatgCACGCCCcctgtggt
 2
 CGGGCGUG m7b Disrupted -0.168000 no TS No effect
hsa-miR-4488 gatgcaCGCCCCCTgtggt
 1
 AGGGGGCG m8a Disrupted -0.242000 no TS No effect
hsa-miR-4697-5p gatgcaCGCCCCCTgtggt
 1
 AGGGGGCG m8a Disrupted -0.232000 no TS 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.1716875C>G COSN9007076 8051710 [pancreas][NS][carcinoid-endocrine_tumour][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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