SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_014464 |
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Gene Symbol: | TINAG |
Description: | Homo sapiens tubulointerstitial nephritis antigen (TINAG), mRNA. |
Gene Location: | chr6(+):54173202-54254950 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.54390129A>T | COSN7886987 | 8030353 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3199 |
ggacagcagAGTCCCTaaa |
0 | AGGGACUG | m7a | (m7a->m6b) | NA | NA |
3.630000 |
|
hsa-miR-365a-5p |
ggacagcagAGTCCCTaaa |
0 | AGGGACUU | m7a | (m7a->m6b) | NA | NA |
4.330000 |
|
hsa-miR-365b-5p |
ggacagcagAGTCCCTaaa |
0 | AGGGACUU | m7a | (m7a->m6b) | NA | NA |
4.260000 |
|
hsa-miR-4522 |
ggacagCAGAGTCcctaaa |
1 |
UGACUCUG | m7b | Disrupted | -0.197000 | no TS |
4.500000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.54390134C>T | COSN4859885 | tumor_4104893 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2909 |
gcagagtCCCTAAatgtct |
2 |
GUUAGGGC | m6b | Disrupted | -0.318000 | -0.169000 |
0.360000 |
hsa-miR-3162-5p |
gcagagTCCCTAAatgtct |
0 | UUAGGGAG | m7a | Disrupted | -0.177000 | no TS |
0.060000 |
hsa-miR-3199 |
gcagAGTCCCTaaatgtct |
0 | AGGGACUG | m7a | Disrupted | NA | NA |
5.300000 |
hsa-miR-365a-5p |
gcagAGTCCCTaaatgtct |
0 | AGGGACUU | m7a | Disrupted | NA | NA |
8.750000 |
hsa-miR-365b-5p |
gcagAGTCCCTaaatgtct |
0 | AGGGACUU | m7a | Disrupted | NA | NA |
9.150000 |
hsa-miR-4477b |
gcagagTCCTTAAatgtct |
0 | AUUAAGGA | m7b | Created | no TS | -0.267000 |
0.960000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
54390130 | rs115645370 | G | G |
hsa-miR-4522 hsa-miR-6728-3p hsa-miR-7845-5p |
1 4 13 |
agCAGAGTCccta AGCAGAGtcccta agcagaGTCCCTA |
Disrupted Disrupted Disrupted |
N N N |
-0.197 -0.179 -0.196 |
T |
hsa-miR-4686 hsa-miR-5584-5p hsa-miR-6750-5p hsa-miR-6822-5p |
4 13 13 13 |
AGCAGATtcccta agcagaTTCCCTA agcagaTTCCCTA agcagaTTCCCTA |
Created Created Created Created |
N N N N |
-0.205 -0.122 -0.155 -0.152 |