SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_003242 |
---|---|
Gene Symbol: | TGFBR2 |
Description: | Homo sapiens transforming growth factor, beta receptor II (70/80kDa) (TGFBR2), transcript variant 1, mRNA. |
Gene Location: | chr3(+):30647993-30735633 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30691800A>G | COSN1945906 | RK177_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-202-5p |
gacattgtCATAGGAtaag |
14 |
UUCCUAUG | m7b | Disrupted | -0.565000 | -0.372000 |
-0.020000 |
hsa-miR-425-5p |
gacatTGTCATaggataag |
12 |
AAUGACAC | m6b | Disrupted | -0.076000 | no TS |
13.430000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30692281A>T | COSN6426623 | HX34T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-539-5p |
tgtgcccttATTTCTCCtg |
1 |
GGAGAAAU | m8a | (m8a->m7b) | 0.050000 | no TS |
0.060000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30693226C>T | COSN8489100 | J57_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3915 |
agctTTCCTCAtggttacc |
15 |
UUGAGGAA | m7b | Disrupted | -0.151000 | -0.109000 |
0.080000 |
hsa-miR-3928 |
agctTTCCTCatggttacc |
15 |
GGAGGAAC | m6b | Disrupted | -0.122000 | -0.107000 | No effect |
hsa-miR-4496 |
agcTTTCCTCatggttacc |
0 | GAGGAAAC | m7a | (m7a->m6a) | NA | NA |
-0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30693399G>C | COSN9547763 | AOCS-055-1-7 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30693615G>C | COSN7605636 | 8031121 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-302b-5p |
agaGTTAAAGacagtgtgg |
0 | ACUUUAAC | m7b | (m7b->m6b) | 0.003000 | no TS |
0.060000 |
hsa-miR-302d-5p |
agaGTTAAAGacagtgtgg |
0 | ACUUUAAC | m7b | (m7b->m6b) | 0.003000 | no TS |
0.070000 |
hsa-miR-511 |
agagttAAAGACAgtgtgg |
1 |
GUGUCUUU | m7b | Disrupted | -0.035000 | no TS |
6.170000 |
hsa-miR-892a |
agagttaaACACAGTGtgg |
0 | CACUGUGU | m8a | Created | no TS | -0.121000 |
-0.210000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30693871G>T | COSN14847545 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-212-5p |
aagaCCAAGGaataacatt |
16 |
ACCUUGGC | m6b | Disrupted | -0.162000 | no TS | No effect |
hsa-miR-3189-3p |
aagaCCAAGGaataacatt |
16 |
CCCUUGGG | m6b | Disrupted | -0.161000 | no TS | No effect |
hsa-miR-502-5p |
aagacCAAGGAataacatt |
0 | AUCCUUGC | m6b | Disrupted | -0.249000 | -0.108000 | No effect |
hsa-miR-556-3p |
aagaccaaGTAATAacatt |
0 | AUAUUACC | m6b | Created | no TS | -0.034000 | No effect |
hsa-miR-890 |
aagaCCAAGTAataacatt |
0 | UACUUGGA | m7a | Created | no TS | -0.141000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30693899C>T | COSN14461379 | 8068554 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-16-1-3p |
ctaaaAATACTGacttttt |
11 |
CCAGUAUU | m7b | Disrupted | -0.284000 | -0.036000 |
0.060000 |
hsa-miR-16-2-3p |
ctaaaAATATTGacttttt |
0 | CCAAUAUU | m7b | Created | no TS | -0.157000 |
-0.110000 |
hsa-miR-195-3p |
ctaaaAATATTGacttttt |
0 | CCAAUAUU | m7b | Created | no TS | -0.147000 |
-3.080000 |