SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_005996 |
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Gene Symbol: | TBX3 |
Description: | Homo sapiens T-box 3 (TBX3), transcript variant 1, mRNA. |
Gene Location: | chr12(-):115108058-115121969 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.114670624G>C | COSN1142680 | HX17T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1915-5p |
aaaattgGGCAAGGagtgc |
0 | ACCUUGCC | m7b | Created | no TS | -0.358000 |
-0.690000 |
hsa-miR-2355-5p |
aaaatTGGGGAaggagtgc |
2 |
AUCCCCAG | m6b | Disrupted | -0.128000 | no TS |
0.010000 |
hsa-miR-3667-3p |
aaaattggGGAAGGagtgc |
2 |
ACCUUCCU | m6b | Disrupted | -0.158000 | -0.060000 |
0.450000 |
hsa-miR-502-5p |
aaaattggGCAAGGAgtgc |
0 | AUCCUUGC | m7b | Created | no TS | -0.140000 |
-1.170000 |
hsa-miR-1915-5p |
aaaattgGGCAAGGagtgc |
0 | ACCUUGCC | m7b | Created | no TS | -0.358 |
-0.69 |
hsa-miR-2355-5p |
aaaatTGGGGAaggagtgc |
0 | AUCCCCAG | m6b | Disrupted | -0.128 | no TS |
0.01 |
hsa-miR-3667-3p |
aaaattggGGAAGGagtgc |
0 | ACCUUCCU | m6b | Disrupted | -0.158 | -0.06 |
0.45 |
hsa-miR-502-5p |
aaaattggGCAAGGAgtgc |
0 | AUCCUUGC | m7b | Created | no TS | -0.14 |
-1.17 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.114671122G>T | COSN5831363 | SS6003311 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1226-5p |
caatcctttGCCCTCAaat |
2 |
GUGAGGGC | m7b | (m7b->m6b) | -0.367000 | -0.119000 | No effect |
hsa-miR-3126-5p |
caatcctttTCCCTCAaat |
1 |
UGAGGGAC | m7a | (m6a->m7a) | -0.148000 | -0.257000 | No effect |
hsa-miR-3616-3p |
caatccttTGCCCTCaaat |
2 |
CGAGGGCA | m7b | Disrupted | -0.323000 | no TS | No effect |
hsa-miR-4419a |
caatcctttTCCCTCAaat |
1 |
UGAGGGAG | m7a | (m6a->m7a) | -0.512000 | -0.603000 |
-0.030000 |
hsa-miR-4510 |
caatcctttTCCCTCAaat |
1 |
UGAGGGAG | m7a | (m6a->m7a) | -0.515000 | -0.616000 |
-1.710000 |
hsa-miR-4668-5p |
caatccTTTTCCCTcaaat |
3 |
AGGGAAAA | m8a | Created | -0.206000 | -0.218000 | No effect |
hsa-miR-4721 |
caatcctttGCCCTCAaat |
3 |
UGAGGGCU | m7a | (m7a->m6a) | -0.148000 | no TS | No effect |
hsa-miR-4761-3p |
caatccttTGCCCTCaaat |
0 | GAGGGCAU | m7a | Disrupted | NA | NA | No effect |
hsa-miR-5584-5p |
caatcctTTTCCCTcaaat |
0 | CAGGGAAA | m7b | Created | no TS | -0.062000 | No effect |
hsa-miR-1226-5p |
caatcctttGCCCTCAaat |
2 |
GUGAGGGC | m7b | (m7b->m6b) | -0.367000 | -0.119000 | No effect |
hsa-miR-3126-5p |
caatcctttTCCCTCAaat |
1 |
UGAGGGAC | m7a | (m6a->m7a) | -0.148000 | -0.257000 | No effect |
hsa-miR-3616-3p |
caatccttTGCCCTCaaat |
2 |
CGAGGGCA | m7b | Disrupted | -0.323000 | no TS | No effect |
hsa-miR-4419a |
caatcctttTCCCTCAaat |
1 |
UGAGGGAG | m7a | (m6a->m7a) | -0.512000 | -0.603000 |
-0.030000 |
hsa-miR-4510 |
caatcctttTCCCTCAaat |
1 |
UGAGGGAG | m7a | (m6a->m7a) | -0.515000 | -0.616000 |
-1.710000 |
hsa-miR-4668-5p |
caatccTTTTCCCTcaaat |
3 |
AGGGAAAA | m8a | Created | -0.206000 | -0.218000 | No effect |
hsa-miR-4721 |
caatcctttGCCCTCAaat |
3 |
UGAGGGCU | m7a | (m7a->m6a) | -0.148000 | no TS | No effect |
hsa-miR-4761-3p |
caatccttTGCCCTCaaat |
0 | GAGGGCAU | m7a | Disrupted | NA | NA | No effect |
hsa-miR-5584-5p |
caatcctTTTCCCTcaaat |
0 | CAGGGAAA | m7b | Created | no TS | -0.062000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.114671306T>C | COSN5315890 | RK307_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-185-3p |
ggagggaAGCCCCTaccat |
0 | AGGGGCUG | m7a | Created | -0.248000 | -0.248000 |
-0.470000 |
hsa-miR-3199 |
ggagggaAGTCCCTaccat |
0 | AGGGACUG | m7a | Disrupted | NA | NA |
4.420000 |
hsa-miR-365a-5p |
ggagggAAGTCCCTaccat |
0 | AGGGACUU | m8a | Disrupted | -0.096000 | no TS |
4.110000 |
hsa-miR-365b-5p |
ggagggAAGTCCCTaccat |
0 | AGGGACUU | m8a | Disrupted | -0.096000 | no TS |
8.160000 |
hsa-miR-617 |
ggagGGAAGTCcctaccat |
0 | AGACUUCC | m7b | Disrupted | -0.090000 | no TS |
4.120000 |