SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001174167 |
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Gene Symbol: | SYK |
Description: | Homo sapiens spleen tyrosine kinase (SYK), transcript variant 2, mRNA. |
Gene Location: | chr9(+):93589704-93660842 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.90896066G>A | COSN14793089 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4662a-5p |
aatTTGGCTActtctacgg |
0 | UUAGCCAA | m7b | (m6b->m7b) | no TS | -0.143000 |
-0.200000 |
hsa-miR-548ao-5p |
aatttggcTACTTCTacgg |
0 | AGAAGUAA | m7a | Created | NA | NA |
-1.950000 |
hsa-miR-548ax |
aatttggcTACTTCTacgg |
0 | AGAAGUAA | m7a | Created | NA | NA |
-0.270000 |
hsa-miR-562 |
aatttgGCTACTTctacgg |
0 | AAAGUAGC | m7b | Created | no TS | -0.078000 |
-0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.90896074G>A | COSN14782726 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.90896572A>G | COSN14753677 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1299 |
gagtTTCCAGAgaaagtat |
3 |
UUCUGGAA | m7b | Created | 0.043000 | -0.018000 |
-0.390000 |
hsa-miR-3191-5p |
gagtttCCAGAGAaagtat |
0 | CUCUCUGG | m7b | Created | no TS | -0.207000 |
-5.920000 |
hsa-miR-326 |
gagtttCCAGAGaaagtat |
0 | CCUCUGGG | m6b | Created | no TS | -0.064000 |
-6.740000 |
hsa-miR-330-5p |
gagtttCCAGAGAaagtat |
0 | UCUCUGGG | m7a | Created | no TS | -0.067000 |
-0.130000 |
hsa-miR-4768-5p |
gagtttccAGAGAAagtat |
4 |
AUUCUCUC | m6b | Created | 0.012000 | 0.049000 |
-4.910000 |
hsa-miR-518c-5p |
gagttTCCAGAGAaagtat |
2 |
UCUCUGGA | m8a | Created | -0.258000 | -0.442000 |
-2.270000 |
hsa-miR-875-3p |
gagTTTCCAGagaaagtat |
0 | CCUGGAAA | m7b | (m6b->m7b) | 0.022000 | -0.003000 |
-2.060000 |
hsa-miR-9-5p |
gagtttCCAAAGAaagtat |
3 |
UCUUUGGU | m7a | Disrupted | -0.001000 | 0.024000 |
1.810000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.90896785A>G | ICGC_81192D66-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-106b-5p |
caGCACTTTAggaggccga |
1 |
UAAAGUGC | m8a | (m8a->m7a) | 0.057 | 0.077 |
0.06 |
hsa-miR-150-5p |
cagcactTTGGGAGgccga |
0 | UCUCCCAA | m7b | Created | no TS | 0.042 |
-0.03 |
hsa-miR-17-5p |
caGCACTTTGggaggccga |
1 |
CAAAGUGC | m8a | (m7a->m8a) | 0.057 | 0.077 |
0.03 |
hsa-miR-186-3p |
cagcaCTTTGGGaggccga |
0 | GCCCAAAG | m7b | Created | -0.012 | 0.041 |
-0.75 |
hsa-miR-20a-5p |
caGCACTTTAggaggccga |
1 |
UAAAGUGC | m8a | (m8a->m7a) | 0.057 | 0.077 |
0.01 |
hsa-miR-20b-5p |
caGCACTTTGggaggccga |
1 |
CAAAGUGC | m8a | (m7a->m8a) | 0.057 | 0.077 |
0.01 |
hsa-miR-519d |
caGCACTTTGggaggccga |
1 |
CAAAGUGC | m8a | (m7a->m8a) | 0.046 | 0.067 |
0.01 |
hsa-miR-520g |
cagCACTTTGggaggccga |
0 | ACAAAGUG | m7b | (m6b->m7b) | no TS | 0.139 |
-2.88 |
hsa-miR-520h |
cagCACTTTGggaggccga |
0 | ACAAAGUG | m7b | (m6b->m7b) | no TS | 0.139 |
-2.9 |
hsa-miR-93-5p |
caGCACTTTGggaggccga |
1 |
CAAAGUGC | m8a | (m7a->m8a) | 0.057 | 0.077 |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.90897086G>A | COSN9527495 | AOCS-128-1-0 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3692-5p |
atgCCAGCAGatataaata |
0 | CCUGCUGG | m7b | (m7b->m6b) | -0.184000 | -0.086000 |
5.010000 |
hsa-miR-4686 |
atgccAGCAGATAtaaata |
4 |
UAUCUGCU | m8a | Disrupted | -0.001000 | -0.012000 |
0.200000 |
hsa-miR-93-3p |
atgcCAGCAGatataaata |
1 |
ACUGCUGA | m6b | Disrupted | -0.018000 | no TS |
2.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.90897474A>T | COSN2333347 | RK032_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1255b-2-3p |
agtttggtaAAGTGGTgac |
2 |
AACCACUU | m7b | (m7b->m6c) | -0.042000 | no TS |
3.990000 |
hsa-miR-1255b-2-3p |
agtttggtaAAGTGGTgac |
0 | AACCACUU | m7b | (m7b->m6c) | -0.042 | no TS |
3.99 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.90898029C>T | COSN14867368 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1254 |
attctcataTCCAGGCTgc |
0 | AGCCUGGA | m8a | (m7b->m8a) | -0.104000 | -0.301000 |
-0.480000 |
hsa-miR-3116 |
attctcataTCCAGGCtgc |
0 | UGCCUGGA | m7b | (m6c->m7b) | -0.095000 | -0.273000 | No effect |
hsa-miR-3201 |
attctCATATCCaggctgc |
0 | GGGAUAUG | m7b | Created | no TS | -0.188000 |
-4.820000 |
hsa-miR-4791 |
attctCATATCCAggctgc |
0 | UGGAUAUG | m8a | Created | no TS | -0.156000 |
-2.854000 |
hsa-miR-661 |
attctcataCCCAGGCtgc |
2 |
UGCCUGGG | m7b | (m7b->m6c) | -0.190000 | no TS |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.90898117C>A | COSN2333348 | RK126_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3619-3p |
ccttATGGTCCttctttag |
2 |
GGGACCAU | m7b | Disrupted | -0.292000 | -0.074000 | No effect |
hsa-miR-5585-5p |
ccttatgGTACTTCtttag |
0 | UGAAGUAC | m7b | Created | no TS | -0.134000 |
-0.320000 |
hsa-miR-624-5p |
ccttaTGGTACTtctttag |
0 | UAGUACCA | m7b | Created | no TS | -0.191000 |
-1.820000 |
hsa-miR-3619-3p |
ccttATGGTCCttctttag |
2 |
GGGACCAU | m7b | Disrupted | -0.292 | -0.074 | No effect |
hsa-miR-5585-5p |
ccttatgGTACTTCtttag |
0 | UGAAGUAC | m7b | Created | no TS | -0.134 |
-0.32 |
hsa-miR-624-5p |
ccttaTGGTACTtctttag |
0 | UAGUACCA | m7b | Created | no TS | -0.191 |
-1.82 |