SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_177530
Gene Symbol: SULT1A1
Description: Homo sapiens sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 (SULT1A1), transcript variant 1, mRNA.
Gene Location: chr16(-):28616915-28620649
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.28605807A>G COSN6645156 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-508-5p ggctcCTGGAGTcactgca
 1
 UACUCCAG m7b Disrupted 0.000000 no TS No effect
hsa-miR-508-5p ggctcCTGGAGTcactgca
 1
 UACUCCAG m7b Disrupted 0.000000 no TS No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table
Location SNP ID Ancestral
Allele		 Allele miR ID Conservation miRSite FuncClass Validation context+
score change
28605807 rs6839 A A hsa-miR-508-5p
hsa-miR-665
1
1
 tcCTGGAGTcact
TCCTGGAgtcact
 Disrupted
Disrupted
N
N
 No Change
No Change
G hsa-miR-6840-3p
hsa-miR-6846-3p
hsa-miR-6859-3p
hsa-miR-7973
1
1
1
2
 TCCTGGGgtcact
tcctGGGGTCAct
tcctGGGGTCAct
tcctgGGGTCACt
 Created
Created
Created
Created
N
N
N
N
 No Change
No Change
No Change
No Change

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