SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_016930
Gene Symbol: STX18
Description: Homo sapiens syntaxin 18 (STX18), mRNA.
Gene Location: chr4(-):4420695-4543775
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.4419641C>T 9_26989 CRC-4-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-127-5p tcccggtAGCTTCAGggaa
 10
 CUGAAGCU m8a Disrupted -0.107 no TS 2.48
hsa-miR-4738-3p tcccggtAGTTTCAgggaa
 10
 UGAAACUG m7a Created 0.054 0.076 -0.51

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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