SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_020860
Gene Symbol: STIM2
Description: Homo sapiens stromal interaction molecule 2 (STIM2), transcript variant 3, mRNA.
Gene Location: chr4(+):26862312-27027003
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.27023052A>C COSN8870279 SNUH_G15_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1275 ttaTCCCCCACcctccact
 1
 GUGGGGGA m8a Disrupted -0.267000 no TS 3.090000
hsa-miR-1914-3p ttatcccccCCCCTCCact
 0 GGAGGGGU m7a (m6b->m7a) NA NA -12.240000
hsa-miR-4447 ttatCCCCCACCctccact
 1
 GGUGGGGG m8a Disrupted -0.322000 no TS 2.900000
hsa-miR-4472 ttatCCCCCACCctccact
 1
 GGUGGGGG m8a Disrupted -0.322000 no TS 2.010000
hsa-miR-4525 ttATCCCCCCccctccact
 1
 GGGGGGAU m8a (m7a->m8a) -0.469000 -0.244000 0.160000
hsa-miR-4665-5p ttaTCCCCCAccctccact
 1
 CUGGGGGA m7b (m7b->m6b) -0.267000 no TS 9.090000
hsa-miR-92a-2-5p ttatcCCCCACCCtccact
 0 GGGUGGGG m8a Disrupted -0.559000 -0.298000 0.090000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.27023240C>T COSN1295220 HCC102T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3607-3p gacagTTTACAGTcatttc
 17
 ACUGUAAA m8a Disrupted -0.102000 no TS 0.010000
hsa-miR-625-3p gacagttTATAGTCatttc
 0 GACUAUAG m7a Created NA NA No effect
hsa-miR-943 gacagtttACAGTCAtttc
 11
 CUGACUGU m7b Disrupted -0.265000 no TS No effect
hsa-miR-3607-3p gacagTTTACAGTcatttc
 17
 ACUGUAAA m8a Disrupted -0.102 no TS 0.01
hsa-miR-625-3p gacagttTATAGTCatttc
 0 GACUAUAG m7a Created NA NA No effect
hsa-miR-943 gacagtttACAGTCAtttc
 0 CUGACUGU m7b Disrupted -0.265 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr4:g.27023567A>C COSN7482481 8051900 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-138-1-3p gggtttttAAGTAGaacct
 19
 GCUACUUC m6b Disrupted -0.056000 no TS 0.010000
hsa-miR-302a-5p gggttTTTAAGTagaacct
 0 ACUUAAAC m7a Disrupted NA NA 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.27024033G>A COSN9786795 C0086T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4662a-3p gtgtaagCTATCTTgttgc
 0 AAAGAUAG m7b Created no TS 0.018000 0.130000
hsa-miR-5579-3p gtgTAAGCTAtcttgttgc
 0 UUAGCUUA m7b (m6b->m7b) no TS -0.023000 -1.560000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.27024232G>A COSN2020239 RK056_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4714-3p taaattggTAGGTTGtata
 0 CCAACCUA m7b Created no TS -0.049000 -0.060000
hsa-miR-4714-3p taaattggTAGGTTGtata
 0 CCAACCUA m7b Created no TS -0.049 -0.06

Mutation Mutation ID Sample Name Cancer Type
chr4:g.27024900A>G COSN2020240 RK006_C02 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-518a-5p gaaCTTTGCAGttggatga
 1
 CUGCAAAG m8a Disrupted -0.141000 no TS 0.270000
hsa-miR-527 gaaCTTTGCAGttggatga
 1
 CUGCAAAG m8a Disrupted -0.141000 no TS 0.270000
hsa-miR-518a-5p gaaCTTTGCAGttggatga
 1
 CUGCAAAG m8a Disrupted -0.141 no TS 0.27
hsa-miR-527 gaaCTTTGCAGttggatga
 1
 CUGCAAAG m8a Disrupted -0.141 no TS 0.27

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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