SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001135823 |
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Gene Symbol: | SSPN |
Description: | Homo sapiens sarcospan (Kras oncogene-associated gene) (SSPN), transcript variant 2, mRNA. |
Gene Location: | chr12(+):26348268-26387708 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26231208A>G | 9_95247 | CRC-8-Tumor | Colorectal adenocarcinoma | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3163 |
tatTTTTATAtttttatga |
0 | UAUAAAAU | m7a | (m7a->m6a) | 0.665 | 0.635 |
0.01 |
|
hsa-miR-4803 |
tatttTTATGTTtttatga |
4 |
UAACAUAA | m7b | Created | no TS | -0.166 |
-0.6 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26231642G>T | COSN14859945 | LP2000108-DNA_A01 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-151a-3p |
ttgcaaaAGTCTAGataac |
0 | CUAGACUG | m7a | Created | NA | NA | No effect | |
hsa-miR-4305 |
ttgcaaaaGTCTAGataac |
0 | CCUAGACA | m6b | Created | no TS | -0.106000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26232291G>C | COSN7324737 | 8030032 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2276 |
cttgaCTTGCAGggtagtt |
1 |
UCUGCAAG | m7b | Created | -0.380000 | -0.425000 |
-1.550000 |
|
hsa-miR-3691-3p |
cttGACTTGGagggtagtt |
12 |
ACCAAGUC | m7b | (m7b->m6b) | -0.093000 | 0.015000 |
0.050000 |
|
hsa-miR-5695 |
cttgaCTTGGAGggtagtt |
3 |
ACUCCAAG | m7b | Disrupted | -0.183000 | -0.162000 |
0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26232507T>A | COSN8707330 | AOCS-143-1-0 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4275 |
gataaTAATTGagttcaat |
9 |
CCAAUUAC | m6b | Disrupted | 0.048000 | -0.042000 | No effect | |
hsa-miR-4680-5p |
gataataatAGAGTTCaat |
2 |
AGAACUCU | m7b | (m6c->m7b) | -0.018000 | -0.103000 |
-0.080000 |
|
hsa-miR-4795-3p |
gatAATAATAgagttcaat |
2 |
AUAUUAUU | m7b | (m6b->m7b) | 0.138000 | 0.254000 | No effect | |
hsa-miR-618 |
gataataaTAGAGTTcaat |
0 | AAACUCUA | m7b | Created | no TS | -0.022000 | No effect | |
hsa-miR-944 |
gatAATAATTgagttcaat |
8 |
AAAUUAUU | m7b | (m7b->m6b) | 0.679000 | 0.524000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26232527G>A | COSN7324738 | 8016470 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4491 |
cgcctcTCCACATTgccta |
0 | AAUGUGGA | m8a | Created | no TS | 0.032000 |
-2.230000 |
|
hsa-miR-4657 |
cgcctcTCCACATTgccta |
0 | AAUGUGGA | m8a | Created | no TS | 0.032000 |
-0.880000 |
|
hsa-miR-658 |
cgcctCTCCGCattgccta |
1 |
GGCGGAGG | m6b | Disrupted | -0.082000 | no TS |
0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26233145A>C | COSN8707331 | AOCS-147-1-1 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-124-5p |
atagTGAACACtacaagtt |
0 | CGUGUUCA | m7b | Disrupted | -0.093000 | -0.066000 |
2.810000 |
|
hsa-miR-135b-3p |
atagtgaaCCCTACAagtt |
0 | AUGUAGGG | m7b | Created | no TS | -0.162000 |
-0.070000 |
|
hsa-miR-142-3p |
atagtgaACACTACAagtt |
3 |
UGUAGUGU | m8a | Disrupted | -0.109000 | no TS |
4.370000 |
|
hsa-miR-296-3p |
atagtgAACCCTacaagtt |
0 | GAGGGUUG | m6b | Created | -0.028000 | -0.050000 |
-0.900000 |
|
hsa-miR-4255 |
atagtGAACACTacaagtt |
0 | CAGUGUUC | m7b | Disrupted | -0.215000 | -0.172000 |
4.330000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26233363C>T | COSN1146557 | HX13T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-147a |
atacacacaCACACACaca |
0 | GUGUGUGG | m7a | (m7a->m6b) | 0.007000 | 0.007000 |
-0.600000 |
|
hsa-miR-223-5p |
atacacacATACACacaca |
0 | CGUGUAUU | m6b | Created | 0.185000 | 0.213000 | No effect | |
hsa-miR-297 |
atacacACATACAcacaca |
0 | AUGUAUGU | m7b | Created | 0.029000 | -0.001000 |
-0.810000 |
|
hsa-miR-567 |
atacacACATACacacaca |
0 | AGUAUGUU | m6b | Created | 0.041000 | 0.077000 |
-0.240000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26233415G>T | COSN7324739 | 8062308 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-154-3p |
ctattGTATGATTaaatca |
2 |
AAUCAUAC | m8a | Disrupted | -0.059000 | no TS |
2.980000 |
|
hsa-miR-369-3p |
ctattGTATTATTaaatca |
0 | AAUAAUAC | m8a | Created | no TS | 0.011000 |
-2.320000 |
|
hsa-miR-374c-5p |
ctatTGTATTATtaaatca |
0 | AUAAUACA | m8a | Created | no TS | -0.014000 | No effect | |
hsa-miR-4666a-3p |
ctATTGTATGattaaatca |
1 |
CAUACAAU | m8a | (m8a->m7a) | -0.069000 | -0.097000 | No effect | |
hsa-miR-485-3p |
ctatTGTATGAttaaatca |
1 |
GUCAUACA | m7b | Disrupted | -0.072000 | no TS |
0.120000 |
|
hsa-miR-487a |
ctattGTATGATTaaatca |
2 |
AAUCAUAC | m8a | Disrupted | -0.078000 | no TS |
2.710000 |
|
hsa-miR-539-3p |
ctatTGTATGATtaaatca |
1 |
AUCAUACA | m8a | Disrupted | -0.091000 | no TS |
0.090000 |
|
hsa-miR-5692b |
ctattgTATTATTaaatca |
0 | AAUAAUAU | m7a | Created | NA | NA |
0.240000 |
|
hsa-miR-5692c |
ctattgTATTATTaaatca |
0 | AAUAAUAU | m7a | Created | NA | NA |
0.650000 |
|
hsa-miR-655 |
ctatTGTATTATtaaatca |
0 | AUAAUACA | m8a | Created | no TS | -0.023000 |
-1.270000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26234072A>G | COSN5939759 | RK163_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-320a |
ggggtttcCAGCTTTacac |
2 |
AAAAGCUG | m7b | Disrupted | -0.027000 | 0.035000 | No effect | |
hsa-miR-320b |
ggggtttcCAGCTTTacac |
2 |
AAAAGCUG | m7b | Disrupted | -0.031000 | 0.031000 | No effect | |
hsa-miR-320c |
ggggtttcCAGCTTTacac |
2 |
AAAAGCUG | m7b | Disrupted | -0.027000 | 0.035000 | No effect | |
hsa-miR-320d |
ggggtttcCAGCTTTacac |
2 |
AAAAGCUG | m7b | Disrupted | -0.027000 | 0.035000 | No effect | |
hsa-miR-320e |
ggggtttCCAGCTTTacac |
2 |
AAAGCUGG | m8a | Disrupted | -0.151000 | no TS | No effect | |
hsa-miR-4429 |
ggggtttcCAGCTTTacac |
2 |
AAAAGCUG | m7b | Disrupted | -0.035000 | 0.027000 | No effect | |
hsa-miR-875-3p |
ggggTTTCCAGctttacac |
7 |
CCUGGAAA | m7b | Disrupted | -0.002000 | no TS | No effect | |
hsa-miR-9-3p |
ggggtttccAGCTTTAcac |
2 |
AUAAAGCU | m7b | (m7b->m6c) | 0.037000 | 0.065000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.26234639T>C | SSPN_E3_UTR_3 | SJHYPO126_D | Hypodiploid_ALL | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-21-3p |
cttTGGTGTTGtggattca |
8 |
CAACACCA | m8a | Disrupted | -0.223 | -0.041 |
3.56 |
|
hsa-miR-3591-3p |
cttTGGTGTTgtggattca |
8 |
AAACACCA | m7b | (m7b->m6b) | -0.26 | -0.041 |
3.48 |
|
hsa-miR-5003-5p |
ctttggTGTTGTGgattca |
6 |
UCACAACA | m7b | Disrupted | -0.199 | -0.051 |
5.78 |
|
hsa-miR-5092 |
ctttggtgtCGTGGATTca |
0 | AAUCCACG | m8a | (m7b->m8a) | no TS | -0.246 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.26234698T>C | COSN1568486 | RK020_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3668 |
attTCTACATgtttgaggt |
3 |
AAUGUAGA | m7b | (m7b->m6b) | -0.265000 | -0.061000 |
1.600000 |
hsa-miR-3668 |
attTCTACATgtttgaggt |
3 |
AAUGUAGA | m7b | (m7b->m6b) | -0.265 | -0.061 |
1.6 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
26231197 | rs115326344 | A | A |
hsa-miR-4272 hsa-miR-4275 hsa-miR-6074 |
1 1 9 |
taaTTGAATAttt TAATTGAatattt taatTGAATATtt |
Disrupted Disrupted Disrupted |
N N N |
-0.074 -0.086 -0.199 |
26231435 | rs114210444 | - | G |
hsa-miR-1228-3p hsa-miR-377-3p |
5 7 |
gatGGTGTGAatg gatgGTGTGAAtg |
Unknown Unknown |
N N |
-0.131 -0.107 |
A |
hsa-miR-181c-3p hsa-miR-485-3p hsa-miR-539-3p |
5 7 7 |
GATGGTAtgaatg gatgGTATGAAtg gatgGTATGAAtg |
Unknown Unknown Unknown |
N N N |
-0.156 -0.074 -0.081 |
|||
26232865 | rs182271039 | C | C |
hsa-miR-147a hsa-miR-3689a-5p hsa-miR-3689b-5p hsa-miR-3689e hsa-miR-3689f hsa-miR-6818-5p hsa-miR-6867-5p |
3 0 0 0 0 3 3 |
ttatcaCACACAA tTATCACAcacaa tTATCACAcacaa tTATCACAcacaa tTATCACAcacaa ttaTCACACAcaa ttatCACACACAa |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
0.007 0.042 0.042 0.042 0.038 0.008 -0.044 |
T |
hsa-miR-223-5p |
3 |
ttatcATACACAa |
Created |
N |
0.034 |
|||
26232868 | rs34141209 | - | - |
hsa-miR-147a hsa-miR-2113 hsa-miR-5010-3p hsa-miR-599 hsa-miR-6867-5p |
3 4 3 3 3 |
tcaCACACAAaag tcacaCACAAAAg tcacACACAAAAg tcacACACAAAag tCACACACAaaag |
Unknown Unknown Unknown Unknown Unknown |
N N N N N |
0.005 0.101 0.127 0.057 -0.044 |
A |
hsa-miR-6818-5p |
3 |
TCACACAAcaaaag |
Unknown |
N |
-0.017 |
|||
26233210 | rs112544008 | G | G |
hsa-miR-4490 |
2 |
TTACCAGtaattc |
Disrupted |
N |
-0.019 |
A |
hsa-miR-944 |
1 |
ttaccAATAATTc |
Created |
N |
0.248 |
|||
26233351 | rs11048437 | C | C |
hsa-miR-223-5p hsa-miR-511-3p |
1 0 |
tatATACACAtac tataTACACATAc |
Disrupted Disrupted |
N N |
0.038 0.05 |
T |
hsa-miR-190a-3p hsa-miR-3924 hsa-miR-5011-5p |
1 0 1 |
tATATATAcatac tatatATACATAc TATATATAcatac |
Created Created Created |
N N N |
-0.007 0.053 0.125 |
|||
26233355 | rs34695916 | C | T |
hsa-miR-223-5p hsa-miR-297 hsa-miR-511-3p hsa-miR-567 |
0 |
tacacATACACAc tacACATACAcac TACACATAcacac tacACATACAcac |
Created Created Created Created |
N N N N |
0.027 0.029 0.045 0.041 |
C |
hsa-miR-6867-5p |
0 |
taCACACACAcac |
Disrupted |
N |
0.031 |
|||
26233357 | rs34295709 | C | C |
hsa-miR-223-5p hsa-miR-297 hsa-miR-567 hsa-miR-6867-5p |
0 |
cacATACACAcac cACATACAcacac cACATACAcacac cacataCACACAC |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.007 0.029 0.041 0.045 |
26233357 | rs35874267 | - | CACA |
hsa-miR-223-5p hsa-miR-297 hsa-miR-567 hsa-miR-6867-5p |
0 |
atacacATACACAcacaca atacACATACAcacacaca atacACATACAcacacaca atacacataCACACACAca |
Unknown Unknown Unknown Unknown |
N N N N |
0.011 0.01 0.005 0.021 |
- | |||||||||
26233357 | rs72405848 | - | CA |
hsa-miR-223-5p hsa-miR-297 hsa-miR-567 hsa-miR-6867-5p |
0 |
acacATACACAcaca acACATACAcacaca acACATACAcacaca acacataCACACACA |
Unknown Unknown Unknown Unknown |
N N N N |
0.005 0.004 0.003 0.015 |
- | |||||||||
26233375 | rs187365608 | T | T |
hsa-miR-190a-3p hsa-miR-5011-5p |
2 2 |
cacATATATActa cacATATATActa |
Disrupted Disrupted |
N N |
0.173 0.17 |
C |
hsa-miR-297 hsa-miR-3924 hsa-miR-567 |
1 2 1 |
cACATACAtacta cacATACATActa cACATACAtacta |
Created Created Created |
N N N |
-0.003 0.094 0.039 |
|||
26234078 | rs182064804 | A | A |
hsa-miR-320a hsa-miR-320b hsa-miR-320c hsa-miR-320d hsa-miR-4429 hsa-miR-9-3p |
2 2 2 2 2 2 |
AGCTTTAcacttc AGCTTTAcacttc AGCTTTAcacttc AGCTTTAcacttc AGCTTTAcacttc AGCTTTAcacttc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
-0.073 -0.073 -0.073 -0.073 -0.073 -0.028 |
G |
hsa-miR-130a-3p hsa-miR-130b-3p hsa-miR-19a-3p hsa-miR-19b-3p hsa-miR-301a-3p hsa-miR-301b hsa-miR-3666 hsa-miR-4295 hsa-miR-454-3p hsa-miR-518a-5p hsa-miR-519a-3p hsa-miR-519b-3p hsa-miR-519c-3p hsa-miR-527 |
2 2 2 2 2 2 2 2 2 2 2 2 2 2 |
agctTTGCACTtc agctTTGCACTtc agcTTTGCACttc agcTTTGCACttc agctTTGCACTtc agctTTGCACTtc agctTTGCACTtc agctTTGCACTtc agctTTGCACTtc agCTTTGCActtc agcttTGCACTTc agcttTGCACTTc agcttTGCACTTc agCTTTGCActtc |
Created Created Created Created Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N N N N N |
-0.113 -0.132 -0.04 -0.04 -0.085 -0.085 -0.094 -0.085 -0.104 -0.034 -0.091 -0.091 -0.091 -0.034 |
|||
26234511 | rs74072108 | T | T |
hsa-miR-3646 |
4 |
caTTCATTTggat |
Disrupted |
N |
-0.02 |
C |
hsa-miR-1257 hsa-miR-3691-3p |
5 4 |
CATTCACttggat cattcACTTGGAt |
Created Created |
N N |
-0.171 -0.125 |