SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_003122
Gene Symbol: SPINK1
Description: Homo sapiens serine peptidase inhibitor, Kazal type 1 (SPINK1), mRNA.
Gene Location: chr5(-):147204142-147211260
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.147824629C>T COSN167592 GC8_T [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5190 tcagGTCACTGcgaggcct
 0 CCAGUGAC m7b Created no TS -0.144000 -10.880000
hsa-miR-5190 tcagGTCACTGcgaggcct
 0 CCAGUGAC m7b Created no TS -0.144 -10.88

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table
Location SNP ID Ancestral
Allele		 Allele miR ID Conservation miRSite FuncClass Validation context+
score change
147824629 rs11319 - C hsa-miR-579-5p
1
 ggtcACCGCGAgg
 Unknown
N
 -0.308
T hsa-miR-5190
0 gGTCACTGcgagg
 Unknown
N
 -0.144

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