SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001100422
Gene Symbol: SPATS2L
Description: Homo sapiens spermatogenesis associated, serine-rich 2-like (SPATS2L), transcript variant 2, mRNA.
Gene Location: chr2(+):201170984-201346986
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.200478912T>C COSN6932394 8069446 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3148 tctTTTTTCCttttctttt
 1
 UGGAAAAA m7b (m6b->m7b) 0.266000 0.268000 -0.400000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.200480143A>G COSN6164056 RK212_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4470 aaaaaatgaGTTTGCCAgg
 5
 UGGCAAAC m8a (m7b->m8a) 0.105000 0.078000 0.260000
hsa-miR-4760-3p aaaaaATGAATTTgccagg
 0 AAAUUCAU m8a Disrupted 0.129000 no TS 1.730000
hsa-miR-664-3p aaaaAATGAATttgccagg
 0 UAUUCAUU m7b Disrupted 0.095000 no TS 0.020000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.200482040A>G COSN6419560 HX11T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-204-5p caaaaaAAAGGGAAaaaaa
 2
 UUCCCUUU m8a Created 0.096000 -0.252000 -1.160000
hsa-miR-211-5p caaaaaAAAGGGAAaaaaa
 2
 UUCCCUUU m8a Created 0.096000 -0.263000 -0.180000
hsa-miR-4446-5p caaaaaaaAGGGAAAaaaa
 2
 AUUUCCCU m7b Created 0.096000 -0.232000 No effect
hsa-miR-4755-5p caaaaaaAAGGGAAAaaaa
 2
 UUUCCCUU m8a Created 0.077000 -0.262000 -0.130000
hsa-miR-5006-3p caaaaaaAAGGGAAAaaaa
 2
 UUUCCCUU m8a Created 0.092000 -0.247000 -0.110000
hsa-miR-623 caaaaaaAAGGGAaaaaaa
 3
 AUCCCUUG m6b Created 0.043000 -0.107000 -2.120000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.200482042G>A COSN1231658 HX11T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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