SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_007237
Gene Symbol: SP140
Description: Homo sapiens SP140 nuclear body protein (SP140), transcript variant 2, mRNA.
Gene Location: chr2(+):231090444-231177930
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.230313149C>G COSN4990758 SS6003311 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1253 ctgacTCTTCTCggagtct
 1
 AGAGAAGA m7b Disrupted -0.212000 -0.095000 0.810000
hsa-miR-5197-3p ctgaCTCTTCTcggagtct
 2
 AAGAAGAG m7b Disrupted -0.162000 -0.055000 10.050000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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