SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006932 |
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Gene Symbol: | SMTN |
Description: | Homo sapiens smoothelin (SMTN), transcript variant 4, mRNA. |
Gene Location: | chr22(+):31477281-31500610 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.31104477C>T | COSN5770777 | CCC64 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3937 |
ctgcCCGCCTGcatggcca |
0 | ACAGGCGG | m7b | Created | no TS | 0.000000 |
-0.170000 |
|
hsa-miR-4767 |
ctgccCGCCCGCatggcca |
0 | CGCGGGCG | m7b | Disrupted | 0.000000 | no TS |
-1.070000 |
|
hsa-miR-3937 |
ctgcCCGCCTGcatggcca |
0 | ACAGGCGG | m7b | Created | no TS | 0.000000 |
-0.170000 |
|
hsa-miR-4767 |
ctgccCGCCCGCatggcca |
0 | CGCGGGCG | m7b | Disrupted | 0.000000 | no TS |
-1.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.31104550G>A | COSN6692630 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-34a-5p |
ccgcccacCACTGCCctgt |
0 | UGGCAGUG | m7b | Created | no TS | -0.132000 |
-1.520000 |
hsa-miR-34c-5p |
ccgcccacCACTGCCctgt |
0 | AGGCAGUG | m7b | Created | no TS | -0.132000 |
-3.640000 |
hsa-miR-449a |
ccgcccacCACTGCCctgt |
0 | UGGCAGUG | m7b | Created | no TS | -0.123000 |
-2.240000 |
hsa-miR-449b-5p |
ccgcccacCACTGCCctgt |
0 | AGGCAGUG | m7b | Created | no TS | -0.123000 |
-2.380000 |
hsa-miR-541-3p |
ccGCCCACCActgccctgt |
8 |
UGGUGGGC | m8a | (m7a->m8a) | -0.132000 | -0.357000 |
-3.350000 |
hsa-miR-654-5p |
ccGCCCACCActgccctgt |
8 |
UGGUGGGC | m8a | (m7a->m8a) | -0.151000 | -0.378000 |
-3.340000 |
hsa-miR-885-3p |
ccgcccacCGCTGCCctgt |
6 |
AGGCAGCG | m7b | Disrupted | -0.174000 | no TS |
1.980000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
31104473 | rs201517028 | C | C |
hsa-miR-4767 hsa-miR-6721-5p hsa-miR-7112-5p |
0 |
cctgccCGCCCGC CCTGCCCgcccgc cCTGCCCGcccgc |
Disrupted Disrupted Disrupted |
N N N |
No Change No Change No Change |
T |
hsa-miR-4514 hsa-miR-4692 hsa-miR-6808-5p hsa-miR-6893-5p hsa-miR-940 |
0 |
cCTGCCTGcccgc cCTGCCTGcccgc CCTGCCTgcccgc CCTGCCTgcccgc CCTGCCTgcccgc |
Created Created Created Created Created |
N N N N N |
No Change No Change No Change No Change No Change |
|||
31104550 | rs10304 | G | G |
hsa-miR-6786-5p hsa-miR-885-3p |
7 6 |
CCCACCGctgccc cccacCGCTGCCc |
Disrupted Disrupted |
N N |
-0.215 -0.174 |
A |
hsa-miR-34a-5p hsa-miR-34c-5p hsa-miR-449a hsa-miR-449b-5p hsa-miR-541-3p hsa-miR-654-5p hsa-miR-6769a-5p hsa-miR-6769b-5p hsa-miR-92a-2-5p |
6 6 6 6 7 7 7 7 7 |
cccacCACTGCCc cccacCACTGCCc cccacCACTGCCc cccacCACTGCCc CCCACCActgccc CCCACCActgccc CCCACCActgccc CCCACCActgccc CCCACCActgccc |
Created Created Created Created Created Created Created Created Created |
N N N N N N N N N |
-0.132 -0.132 -0.123 -0.123 -0.225 -0.227 -0.128 -0.128 -0.106 |