SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_001145044
Gene Symbol:	SLCO3A1
Description:	Homo sapiens solute carrier organic anion transporter family, member 3A1 (SLCO3A1), transcript variant 2, mRNA.
Gene Location:	chr15(+):92396937-92715665
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.92172246C>T			COSN7254066		8031085		[pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1307-3p	gaaatcaGCCGAGagggta	0	ACUCGGCG	m6b	Disrupted	-0.226000	no TS	16.240000
hsa-miR-3615	gaaatcagCCGAGAGggta	0	UCUCUCGG	m7b	Disrupted	-0.259000	no TS	2.190000
hsa-miR-4638-5p	gaaatcAGCCGAGagggta	0	ACUCGGCU	m7b	Disrupted	-0.449000	no TS	2.720000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.92172304A>G			COSN6076650		RK053_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4461	acataCTCAATagattttt	12	GAUUGAGA	m6b	Disrupted	-0.085000	no TS	-3.090000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Germline mutations in target sites of miRNAs in somatic mutation table

Location	SNP ID	Ancestral Allele	Allele	miR ID	Conservation	miRSite	FuncClass	Validation	context+ score change
92172246	rs139589975	C	C	hsa-miR-1307-3p hsa-miR-3615 hsa-miR-4638-5p	3 3 2	atcaGCCGAGAgg atcagCCGAGAGg atcAGCCGAGAgg	Disrupted Disrupted Disrupted	N N N	-0.226 -0.259 -0.449
			T	hsa-miR-1207-3p hsa-miR-6787-3p	2 2	atCAGCTGAgagg atcAGCTGAGAgg	Created Created	N N	-0.136 -0.29

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