SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_173514 |
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Gene Symbol: | SLC38A9 |
Description: | Homo sapiens solute carrier family 38, member 9 (SLC38A9), mRNA. |
Gene Location: | chr5(-):54921675-55008163 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.55625912C>A | COSN7947315 | 8062308 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-489 |
aagtaATGTCAatgtaatc |
0 | GUGACAUC | m6b | Disrupted | -0.113000 | no TS |
0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.55625934A>G | COSN2110805 | RK159_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-138-1-3p |
tttgaagaaGAAGTAGaga |
2 |
GCUACUUC | m7b | (m6b->m7b) | -0.101000 | -0.358000 |
-0.990000 |
hsa-miR-3682-5p |
tttgaagaAGAAGTAGaga |
0 | CUACUUCU | m8a | Created | no TS | -0.155000 |
-3.410000 |
hsa-miR-4659a-3p |
tttGAAGAAAaagtagaga |
3 |
UUUCUUCU | m7a | (m7a->m6b) | -0.114000 | -0.174000 |
-0.010000 |
hsa-miR-4659b-3p |
tttGAAGAAAaagtagaga |
3 |
UUUCUUCU | m7a | (m7a->m6b) | -0.114000 | -0.174000 |
-0.040000 |
hsa-miR-4778-3p |
tttGAAGAAGAagtagaga |
0 | UCUUCUUC | m8a | Created | no TS | -0.576000 |
0.270000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.55626145G>T | COSN5077585 | HX18T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-146a-3p |
tctcagggtTTCAGAGcag |
0 | CCUCUGAA | m7b | (m6b->m7b) | no TS | -0.107000 |
-0.890000 |
hsa-miR-301a-5p |
tctcagggtGTCAGAGCag |
0 | GCUCUGAC | m8a | (m8a->m7a) | -0.154000 | no TS |
-1.040000 |
hsa-miR-3620 |
tctCAGGGTGtcagagcag |
0 | UCACCCUG | m7b | (m7b->m6c) | -0.221000 | no TS |
7.400000 |
hsa-miR-3660 |
tctcagggTGTCAGagcag |
3 |
ACUGACAG | m6b | Disrupted | -0.071000 | no TS |
2.570000 |
hsa-miR-4526 |
tctcagggTGTCAGagcag |
3 |
GCUGACAG | m6b | Disrupted | -0.071000 | no TS |
2.870000 |