SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_018018
Gene Symbol: SLC38A4
Description: Homo sapiens solute carrier family 38, member 4 (SLC38A4), transcript variant 2, mRNA.
Gene Location: chr12(-):47158543-47219780
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.46764782A>G COSN6616096 CHC320T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4699-3p tggtatatAGTAAATgaac
 0 AAUUUACU m7b Created no TS -0.165000 -0.300000
hsa-miR-4729 tggtatataATAAATGAac
 16
 UCAUUUAU m8a (m8a->m7a) -0.190000 -0.033000 -0.140000
hsa-miR-4795-3p tggtatATAATAaatgaac
 1
 AUAUUAUU m6b Disrupted 0.028000 0.042000 0.050000
hsa-miR-625-3p tggtaTATAGTaaatgaac
 1
 GACUAUAG m6b Created -0.093000 -0.197000 -0.020000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.46764821G>A COSN7372203 8044180 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-150-5p gtaTTGGGAGgcttctttt
 9
 UCUCCCAA m7b (m7b->m6c) -0.235000 no TS 4.300000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.46765082A>T COSN5944920 RK200_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4744 agcaTCTTTAGgatatatt
 1
 UCUAAAGA m7b Disrupted -0.137000 no TS 0.730000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.46765354G>A COSN5716676 HCC22T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-141-3p taataCAGTGTTgagtggt
 0 UAACACUG m7b Disrupted -0.146000 no TS 4.940000
hsa-miR-200a-3p taataCAGTGTTgagtggt
 0 UAACACUG m7b Disrupted -0.137000 no TS 4.930000
hsa-miR-200b-3p taataCAGTATTgagtggt
 17
 UAAUACUG m7b Created 0.000000 -0.097000 -0.020000
hsa-miR-200c-3p taataCAGTATTgagtggt
 17
 UAAUACUG m7b Created 0.000000 -0.097000 -0.050000
hsa-miR-429 taataCAGTATTgagtggt
 17
 UAAUACUG m7b Created 0.000000 -0.106000 -0.010000
hsa-miR-141-3p taataCAGTGTTgagtggt
 0 UAACACUG m7b Disrupted -0.146000 no TS 4.940000
hsa-miR-200a-3p taataCAGTGTTgagtggt
 0 UAACACUG m7b Disrupted -0.137000 no TS 4.930000
hsa-miR-200b-3p taataCAGTATTgagtggt
 17
 UAAUACUG m7b Created 0.000000 -0.097000 -0.020000
hsa-miR-200c-3p taataCAGTATTgagtggt
 17
 UAAUACUG m7b Created 0.000000 -0.097000 -0.050000
hsa-miR-429 taataCAGTATTgagtggt
 17
 UAAUACUG m7b Created 0.000000 -0.106000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.46765538A>G COSN5716678 HX30T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5011-5p aagtTATATATAgtttggc
 3
 UAUAUAUA m8a Disrupted 0.147000 0.046000 No effect
hsa-miR-5580-3p aagttATATGTagtttggc
 2
 CACAUAUG m6b Created -0.069000 -0.033000 -0.590000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.46766624T>G COSN1148500 BN05T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4436b-5p ttatcttgAGTGGAatgtt
 4
 GUCCACUU m6b Created -0.371000 -0.537000 0.650000
hsa-miR-4436b-5p ttatcttgAGTGGAatgtt
 4
 GUCCACUU m6b Created -0.371000 -0.537000 0.650000
hsa-miR-4436b-5p ttatcttgAGTGGAatgtt
 0 GUCCACUU m6b Created -0.371 -0.537 0.65

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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