SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001143824 |
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Gene Symbol: | SLC38A4 |
Description: | Homo sapiens solute carrier family 38, member 4 (SLC38A4), transcript variant 2, mRNA. |
Gene Location: | chr12(-):47158543-47219780 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.46764782A>G | COSN6616096 | CHC320T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4699-3p |
tggtatatAGTAAATgaac |
0 | AAUUUACU | m7b | Created | no TS | -0.165000 |
-0.300000 |
hsa-miR-4729 |
tggtatataATAAATGAac |
16 |
UCAUUUAU | m8a | (m8a->m7a) | -0.190000 | -0.033000 |
-0.140000 |
hsa-miR-4795-3p |
tggtatATAATAaatgaac |
1 |
AUAUUAUU | m6b | Disrupted | 0.028000 | 0.042000 |
0.050000 |
hsa-miR-625-3p |
tggtaTATAGTaaatgaac |
1 |
GACUAUAG | m6b | Created | -0.093000 | -0.197000 |
-0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.46764821G>A | COSN7372203 | 8044180 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-150-5p |
gtaTTGGGAGgcttctttt |
9 |
UCUCCCAA | m7b | (m7b->m6c) | -0.235000 | no TS |
4.300000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.46765082A>T | COSN5944920 | RK200_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4744 |
agcaTCTTTAGgatatatt |
1 |
UCUAAAGA | m7b | Disrupted | -0.137000 | no TS |
0.730000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.46765354G>A | COSN5716676 | HCC22T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-141-3p |
taataCAGTGTTgagtggt |
0 | UAACACUG | m7b | Disrupted | -0.146000 | no TS |
4.940000 |
hsa-miR-200a-3p |
taataCAGTGTTgagtggt |
0 | UAACACUG | m7b | Disrupted | -0.137000 | no TS |
4.930000 |
hsa-miR-200b-3p |
taataCAGTATTgagtggt |
17 |
UAAUACUG | m7b | Created | 0.000000 | -0.097000 |
-0.020000 |
hsa-miR-200c-3p |
taataCAGTATTgagtggt |
17 |
UAAUACUG | m7b | Created | 0.000000 | -0.097000 |
-0.050000 |
hsa-miR-429 |
taataCAGTATTgagtggt |
17 |
UAAUACUG | m7b | Created | 0.000000 | -0.106000 |
-0.010000 |
hsa-miR-141-3p |
taataCAGTGTTgagtggt |
0 | UAACACUG | m7b | Disrupted | -0.146000 | no TS |
4.940000 |
hsa-miR-200a-3p |
taataCAGTGTTgagtggt |
0 | UAACACUG | m7b | Disrupted | -0.137000 | no TS |
4.930000 |
hsa-miR-200b-3p |
taataCAGTATTgagtggt |
17 |
UAAUACUG | m7b | Created | 0.000000 | -0.097000 |
-0.020000 |
hsa-miR-200c-3p |
taataCAGTATTgagtggt |
17 |
UAAUACUG | m7b | Created | 0.000000 | -0.097000 |
-0.050000 |
hsa-miR-429 |
taataCAGTATTgagtggt |
17 |
UAAUACUG | m7b | Created | 0.000000 | -0.106000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.46765538A>G | COSN5716678 | HX30T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5011-5p |
aagtTATATATAgtttggc |
3 |
UAUAUAUA | m8a | Disrupted | 0.147000 | 0.046000 | No effect |
hsa-miR-5580-3p |
aagttATATGTagtttggc |
2 |
CACAUAUG | m6b | Created | -0.069000 | -0.033000 |
-0.590000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.46766624T>G | COSN1148500 | BN05T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4436b-5p |
ttatcttgAGTGGAatgtt |
4 |
GUCCACUU | m6b | Created | -0.371000 | -0.537000 |
0.650000 |
hsa-miR-4436b-5p |
ttatcttgAGTGGAatgtt |
4 |
GUCCACUU | m6b | Created | -0.371000 | -0.537000 |
0.650000 |
hsa-miR-4436b-5p |
ttatcttgAGTGGAatgtt |
0 | GUCCACUU | m6b | Created | -0.371 | -0.537 |
0.65 |