SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_000111
Gene Symbol: SLC26A3
Description: Homo sapiens solute carrier family 26, member 3 (SLC26A3), mRNA.
Gene Location: chr7(-):107405911-107443678

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.107765542C>T COSN15230050 SM-4AX84 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-566 gtatagtGGCGCCactgtt
 1
 GGGCGCCU m6b Disrupted -0.296000 no TS 5.510000
hsa-miR-593-5p gtatagTGGTGCCactgtt
 0 AGGCACCA m7b Created no TS -0.482000 -9.840000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser