SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_006527
Gene Symbol:	SLBP
Description:	Homo sapiens stem-loop binding protein (SLBP), mRNA.
Gene Location:	chr4(-):1694526-1714030
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr4:g.1693339C>T			COSN2006295		RK147_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-466	gcttaatTGTGTAatccct	11	AUACACAU	m6b	Created	-0.185000	-0.233000	-0.610000
hsa-miR-4731-3p	gcttaaTTGTGTaatccct	0	CACACAAG	m6b	Created	no TS	-0.040000	-0.390000
hsa-miR-4801	gcttaaTTGTGTAatccct	0	UACACAAG	m7a	Created	no TS	-0.044000	-2.040000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Germline mutations in target sites of miRNAs in somatic mutation table

Location	SNP ID	Ancestral Allele	Allele	miR ID	Conservation	miRSite	FuncClass	Validation	context+ score change
1693426	rs184551664	A	A	hsa-miR-1284	8	ttaTGTATAGtga	Disrupted	N	-0.23
			G	hsa-miR-4643 hsa-miR-466 hsa-miR-4789-3p hsa-miR-4999-3p	9 9 9 4	ttATGTGTAgtga ttATGTGTAgtga tTATGTGTAgtga ttatgtGTAGTGA	Created Created Created Created	N N N N	-0.105 -0.186 -0.314 -0.177

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