| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_147156 |
|---|---|
| Gene Symbol: | SGMS1 |
| Description: | Homo sapiens sphingomyelin synthase 1 (SGMS1), mRNA. |
| Gene Location: | chr10(-):52065344-52383737 |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr10:g.50306646G>A | COSN15004925 | LP6007414-DNA_A02 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1250 |
tgttGCACCGatattcaaa |
9 |
ACGGUGCU | m6b | Disrupted | -0.260000 | no TS |
1.650000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr10:g.50307039A>G | COSN5251639 | HCC83 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1255b-2-3p |
tatctttcAGTGGTTacct |
0 | AACCACUU | m7a | Created | NA | NA |
-0.010000 |
| hsa-miR-181a-2-3p |
tatcttTCAGTGGTtacct |
0 | ACCACUGA | m8a | Created | no TS | -0.265000 |
-0.580000 |
| hsa-miR-4766-5p |
tatCTTTCAGtggttacct |
0 | UCUGAAAG | m7b | (m6c->m7b) | no TS | -0.156000 |
-1.270000 |
| hsa-miR-1255b-2-3p |
tatctttcAGTGGTTacct |
0 | AACCACUU | m7a | Created | NA | NA |
-0.010000 |
| hsa-miR-181a-2-3p |
tatcttTCAGTGGTtacct |
0 | ACCACUGA | m8a | Created | no TS | -0.265000 |
-0.580000 |
| hsa-miR-4766-5p |
tatCTTTCAGtggttacct |
0 | UCUGAAAG | m7b | (m6c->m7b) | no TS | -0.156000 |
-1.270000 |