SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001256346 |
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Gene Symbol: | SEMA5B |
Description: | Homo sapiens sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B (SEMA5B), transcript variant 1, mRNA. |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.122909255G>A | COSN8488048 | 227_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-20b-3p |
tcacaatttACTACAGcaa |
0 | ACUGUAGU | m7b | (m6b->m7b) | no TS | -0.210000 |
-0.010000 |
hsa-miR-3137 |
tcacaatttGCTACAGcaa |
0 | UCUGUAGC | m7b | (m7b->m6b) | -0.264000 | no TS |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.122909282T>A | ICGC_733730B2-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-147a |
cacacacaCACACACacgc |
0 | GUGUGUGG | m7a | Created | -0.098 | -0.098 |
-0.12 |
hsa-miR-4658 |
cacacACACTCACacacgc |
0 | GUGAGUGU | m8a | Disrupted | -0.139 | no TS |
0.64 |
hsa-miR-4758-5p |
cacacaCACTCACacacgc |
0 | GUGAGUGG | m7a | Disrupted | NA | NA |
15.75 |
hsa-miR-574-5p |
cacaCACACTCAcacacgc |
0 | UGAGUGUG | m8a | Disrupted | -0.449 | no TS |
-3.22 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.122909741C>T | COSN1266401 | HX10T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1207-3p |
ggccttctCCAGCTGgccc |
0 | UCAGCUGG | m7b | Disrupted | -0.108000 | no TS |
0.230000 |
hsa-miR-1253 |
ggcCTTCTCTagctggccc |
0 | AGAGAAGA | m7a | (m6b->m7a) | NA | NA |
-0.340000 |
hsa-miR-3123 |
ggccTTCTCTagctggccc |
0 | CAGAGAAU | m6b | Created | no TS | 0.025000 |
-0.030000 |
hsa-miR-3135b |
ggccttCTCCAGCtggccc |
0 | GGCUGGAG | m7b | Disrupted | -0.146000 | no TS |
0.010000 |
hsa-miR-3925-5p |
ggccTTCTCTagctggccc |
0 | AAGAGAAC | m6b | Created | no TS | 0.018000 |
-0.020000 |
hsa-miR-4434 |
ggcCTTCTCCagctggccc |
0 | AGGAGAAG | m7b | (m7b->m6c) | -0.122000 | no TS |
2.130000 |
hsa-miR-4516 |
ggcCTTCTCCagctggccc |
0 | GGGAGAAG | m7b | (m7b->m6c) | -0.101000 | no TS |
2.260000 |
hsa-miR-4531 |
ggccTTCTCCAgctggccc |
0 | AUGGAGAA | m7b | Disrupted | 0.011000 | no TS |
2.330000 |
hsa-miR-5703 |
ggcCTTCTCCagctggccc |
0 | AGGAGAAG | m7b | (m7b->m6c) | -0.122000 | no TS |
2.560000 |
hsa-miR-1207-3p |
ggccttctCCAGCTGgccc |
0 | UCAGCUGG | m7b | Disrupted | -0.108 | no TS |
0.23 |
hsa-miR-1253 |
ggcCTTCTCTagctggccc |
0 | AGAGAAGA | m7a | (m6b->m7a) | NA | NA |
-0.34 |
hsa-miR-3123 |
ggccTTCTCTagctggccc |
0 | CAGAGAAU | m6b | Created | no TS | 0.025 |
-0.03 |
hsa-miR-3135b |
ggccttCTCCAGCtggccc |
0 | GGCUGGAG | m7b | Disrupted | -0.146 | no TS |
0.01 |
hsa-miR-3925-5p |
ggccTTCTCTagctggccc |
0 | AAGAGAAC | m6b | Created | no TS | 0.018 |
-0.02 |
hsa-miR-4434 |
ggcCTTCTCCagctggccc |
0 | AGGAGAAG | m7b | (m7b->m6c) | -0.122 | no TS |
2.13 |
hsa-miR-4516 |
ggcCTTCTCCagctggccc |
0 | GGGAGAAG | m7b | (m7b->m6c) | -0.101 | no TS |
2.26 |
hsa-miR-4531 |
ggccTTCTCCAgctggccc |
0 | AUGGAGAA | m7b | Disrupted | 0.011 | no TS |
2.33 |
hsa-miR-5703 |
ggcCTTCTCCagctggccc |
0 | AGGAGAAG | m7b | (m7b->m6c) | -0.122 | no TS |
2.56 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.122909918G>T | COSN6748080 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3661 |
ttcagcCCAGGTCtctcat |
0 | UGACCUGG | m7b | Disrupted | -0.193000 | no TS | No effect |
hsa-miR-378g |
ttcAGCCCAGgtctctcat |
0 | ACUGGGCU | m7b | (m7b->m6c) | -0.141000 | no TS |
0.020000 |
hsa-miR-631 |
ttcagcCCAGGTCTctcat |
0 | AGACCUGG | m8a | Disrupted | -0.193000 | no TS | No effect |
hsa-miR-769-5p |
ttcagcccAGGTCTCtcat |
0 | UGAGACCU | m7b | Disrupted | -0.128000 | no TS |
0.140000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.122910024G>A | COSN1266402 | HCC132T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4708-3p |
tgctGCCTTGCctgtgggg |
0 | AGCAAGGC | m7b | Disrupted | -0.382000 | -0.175000 |
13.360000 |
hsa-miR-4742-5p |
tgctgccTTGCCTGtgggg |
0 | UCAGGCAA | m7b | Disrupted | -0.063000 | no TS |
0.530000 |
hsa-miR-4708-3p |
tgctGCCTTGCctgtgggg |
0 | AGCAAGGC | m7b | Disrupted | -0.382000 | -0.175000 |
13.360000 |
hsa-miR-4742-5p |
tgctgccTTGCCTGtgggg |
0 | UCAGGCAA | m7b | Disrupted | -0.063000 | no TS |
0.530000 |
hsa-miR-4708-3p |
tgctGCCTTGCctgtgggg |
0 | AGCAAGGC | m7b | Disrupted | -0.382 | -0.175 |
13.36 |
hsa-miR-4742-5p |
tgctgccTTGCCTGtgggg |
0 | UCAGGCAA | m7b | Disrupted | -0.063 | no TS |
0.53 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.122910058C>T | COSN9735790 | C0062T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3148 |
tttggtTTTTTCCctctgc |
0 | UGGAAAAA | m7b | Created | no TS | -0.024000 |
-4.210000 |
hsa-miR-4419a |
tttggttttCTCCCTCtgc |
0 | UGAGGGAG | m7b | (m7b->m6b) | -0.232000 | no TS |
1.700000 |
hsa-miR-4510 |
tttggttttCTCCCTCtgc |
0 | UGAGGGAG | m7b | (m7b->m6b) | -0.223000 | no TS |
0.350000 |
hsa-miR-4668-5p |
tttggttTTTTCCCTctgc |
0 | AGGGAAAA | m8a | Created | no TS | -0.125000 |
-2.820000 |
hsa-miR-548aa |
ttTGGTTTTTtccctctgc |
0 | AAAAACCA | m8a | (m7b->m8a) | -0.054000 | -0.081000 |
-0.030000 |
hsa-miR-548ac |
tttGGTTTTTtccctctgc |
0 | CAAAAACC | m7b | (m6c->m7b) | no TS | -0.032000 |
2.540000 |
hsa-miR-548ap-3p |
ttTGGTTTTTtccctctgc |
0 | AAAAACCA | m8a | (m7b->m8a) | -0.054000 | -0.081000 |
-0.030000 |
hsa-miR-548d-3p |
tttGGTTTTTtccctctgc |
0 | CAAAAACC | m7b | (m6c->m7b) | no TS | -0.041000 |
-1.570000 |
hsa-miR-548h-3p |
tttGGTTTTTtccctctgc |
0 | CAAAAACC | m7b | (m6c->m7b) | no TS | -0.032000 |
1.040000 |
hsa-miR-548t-3p |
ttTGGTTTTTtccctctgc |
0 | AAAAACCA | m8a | (m7b->m8a) | -0.054000 | -0.081000 |
-0.030000 |
hsa-miR-548z |
tttGGTTTTTtccctctgc |
0 | CAAAAACC | m7b | (m6c->m7b) | no TS | -0.032000 |
1.040000 |
hsa-miR-5584-5p |
tttggtttTTTCCCTctgc |
0 | CAGGGAAA | m7b | Created | no TS | -0.150000 |
1.260000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.122910059T>A | COSN9735791 | C0062T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-548aa |
gttTGGTTTTctccctctg |
0 | AAAAACCA | m7b | (m7b->m6c) | -0.054000 | no TS |
-0.170000 |
hsa-miR-548ap-3p |
gttTGGTTTTctccctctg |
0 | AAAAACCA | m7b | (m7b->m6c) | -0.054000 | no TS |
-5.270000 |
hsa-miR-548t-3p |
gttTGGTTTTctccctctg |
0 | AAAAACCA | m7b | (m7b->m6c) | -0.054000 | no TS |
-0.170000 |