SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001012456
Gene Symbol: SEC61G
Description: Homo sapiens Sec61 gamma subunit (SEC61G), transcript variant 2, mRNA.
Gene Location: chr7(-):54819939-54826939
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.54752301T>- ICGC_ssm_v3_106400 HCC4T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3148 tttttTTTTTCCtttcaag
 0 UGGAAAAA m7b Disrupted -0.124000 -0.118000 1.080000
hsa-miR-488-3p tttttttttCCTTTCAAg
 0 UUGAAAGG m8a (m7a->m8a) -0.336000 -0.336000 0.700000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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