SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_152744 |
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Gene Symbol: | SDK1 |
Description: | Homo sapiens sidekick cell adhesion molecule 1 (SDK1), transcript variant 1, mRNA. |
Gene Location: | chr7(+):3341079-4308631 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4265728G>C | COSN9989560 | AOCS-168-1-8 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2114-3p |
ctaggaAGGCTCaagcggg |
0 | CGAGCCUC | m6b | Created | -0.044000 | -0.156000 |
-2.100000 |
|
hsa-miR-3614-3p |
ctagGAAGGCTcaagcggg |
0 | UAGCCUUC | m7b | Created | no TS | -0.161000 |
-1.140000 |
|
hsa-miR-4297 |
ctaGGAAGGCtcaagcggg |
0 | UGCCUUCC | m7b | (m6b->m7b) | no TS | -0.199000 |
-0.460000 |
|
hsa-miR-4725-5p |
ctaggaAGGGTCaagcggg |
1 |
AGACCCUG | m6b | Disrupted | -0.211000 | -0.099000 |
2.070000 |
|
hsa-miR-504 |
ctaggaAGGGTCaagcggg |
1 |
AGACCCUG | m6b | Disrupted | -0.208000 | -0.099000 |
5.140000 |
|
hsa-miR-5581-5p |
ctaGGAAGGCTcaagcggg |
0 | AGCCUUCC | m8a | Created | no TS | -0.190000 |
-6.190000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4265788C>T | COSN8302128 | PCSI_0098_Pa_P | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-483-5p |
ggccggccCCCGTCTcttt |
1 |
AAGACGGG | m7b | Disrupted | -0.340000 | -0.215000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4266097G>A | COSN2223796 | RK004_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4287 |
cctgacagcAAGGGAGAgg |
0 | UCUCCCUU | m8a | (m7b->m8a) | -0.067000 | -0.120000 |
-0.060000 |
|
hsa-miR-4469 |
cctgacagcGAGGGAGagg |
0 | GCUCCCUC | m7b | (m7b->m6c) | -0.329000 | -0.198000 |
0.010000 |
|
hsa-miR-4655-3p |
cctgacagCGAGGGagagg |
0 | ACCCUCGU | m6b | Disrupted | -0.351000 | -0.185000 |
3.800000 |
|
hsa-miR-4685-3p |
cctgacagcAAGGGAGAgg |
0 | UCUCCCUU | m8a | (m7b->m8a) | -0.061000 | -0.107000 | No effect | |
hsa-miR-4780 |
cctgacagCAAGGGagagg |
0 | ACCCUUGA | m6b | Created | no TS | -0.058000 |
-0.640000 |
|
hsa-miR-623 |
cctgacagCAAGGGAgagg |
0 | AUCCCUUG | m7b | Created | no TS | -0.026000 | No effect | |
hsa-miR-720 |
cctgaCAGCGAGggagagg |
0 | UCUCGCUG | m7b | Disrupted | -0.113000 | no TS | No effect | |
hsa-miR-4287 |
cctgacagcAAGGGAGAgg |
0 | UCUCCCUU | m8a | (m7b->m8a) | -0.067 | -0.12 |
-0.06 |
|
hsa-miR-4469 |
cctgacagcGAGGGAGagg |
0 | GCUCCCUC | m7b | (m7b->m6c) | -0.329 | -0.198 |
0.01 |
|
hsa-miR-4655-3p |
cctgacagCGAGGGagagg |
0 | ACCCUCGU | m6b | Disrupted | -0.351 | -0.185 |
3.8 |
|
hsa-miR-4685-3p |
cctgacagcAAGGGAGAgg |
0 | UCUCCCUU | m8a | (m7b->m8a) | -0.061 | -0.107 | No effect | |
hsa-miR-4780 |
cctgacagCAAGGGagagg |
0 | ACCCUUGA | m6b | Created | no TS | -0.058 |
-0.64 |
|
hsa-miR-623 |
cctgacagCAAGGGAgagg |
0 | AUCCCUUG | m7b | Created | no TS | -0.026 | No effect | |
hsa-miR-720 |
cctgaCAGCGAGggagagg |
0 | UCUCGCUG | m7b | Disrupted | -0.113 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4266593T>C | COSN4869691 | tumor_4107137 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5197-5p |
ttaaaatTGCCATTGtttg |
0 | CAAUGGCA | m8a | Created | no TS | -0.110000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4266750C>A | COSN6882336 | RK128_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4266880G>A | COSN8801549 | SS6003111 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1973 |
ccagTGCACGGcaaacggg |
0 | ACCGUGCA | m7b | Disrupted | -0.137000 | -0.106000 |
0.190000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4266898G>A | COSN4965605 | SS6003113 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1292 |
gcaggtgcCGTTCCCccag |
0 | UGGGAACG | m7b | Disrupted | -0.217000 | -0.295000 |
0.670000 |
|
hsa-miR-183-5p |
gcagGTGCCATtcccccag |
0 | UAUGGCAC | m7b | Created | no TS | 0.110000 |
-0.190000 |
|
hsa-miR-5197-5p |
gcaggTGCCATTcccccag |
0 | CAAUGGCA | m7b | Created | no TS | 0.182000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4266921G>T | COSN6882339 | RK219_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3162-3p |
ctgagGGTAGGGgacaact |
0 | UCCCUACC | m7b | Disrupted | -0.028000 | no TS |
5.550000 |
|
hsa-miR-4433-5p |
ctgagggtaTGGGACaact |
2 |
CGUCCCAC | m6b | Created | -0.111000 | -0.112000 |
-7.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4266922G>T | COSN6882340 | RK219_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3162-3p |
tgagGGTAGGGgacaactg |
0 | UCCCUACC | m7b | Disrupted | -0.028000 | no TS |
5.860000 |
|
hsa-miR-4436b-5p |
tgagggtAGTGGACaactg |
0 | GUCCACUU | m7a | Created | NA | NA |
-6.260000 |
|
hsa-miR-4646-3p |
tgagggtagGGGACAActg |
1 |
AUUGUCCC | m7b | (m7b->m6c) | -0.030000 | -0.055000 |
0.980000 |
|
hsa-miR-4999-3p |
tgagGGTAGTGgacaactg |
0 | UCACUACC | m7b | Created | no TS | 0.049000 |
-16.570000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4267065A>C | COSN8022776 | 8058339 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3660 |
tgtgCTGTCAGcgttgctg |
2 |
ACUGACAG | m7b | Disrupted | 0.199000 | 0.117000 | No effect | |
hsa-miR-4526 |
tgtgCTGTCAGCgttgctg |
2 |
GCUGACAG | m8a | Disrupted | 0.208000 | 0.117000 |
0.210000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4267398C>T | COSN8022782 | 8013222 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1290 |
ccaAAAATCCtagatgctc |
11 |
UGGAUUUU | m7b | (m7b->m6b) | 0.082000 | no TS |
2.690000 |
|
hsa-miR-3167 |
ccaaAAATCCTagatgctc |
0 | AGGAUUUC | m7a | Disrupted | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4267591T>C | COSN2223803 | RK048_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3714 |
cagcgCTGCCTTCtgtgca |
0 | GAAGGCAG | m8a | Created | no TS | 0.094000 | No effect | |
hsa-miR-503 |
cagCGCTGCTttctgtgca |
1 |
UAGCAGCG | m7b | (m7b->m6b) | -0.034000 | -0.006000 | No effect | |
hsa-miR-885-3p |
cagCGCTGCCTtctgtgca |
0 | AGGCAGCG | m8a | Created | -0.113000 | -0.148000 |
-0.030000 |
|
hsa-miR-3714 |
cagcgCTGCCTTCtgtgca |
0 | GAAGGCAG | m8a | Created | no TS | 0.094000 | No effect | |
hsa-miR-503 |
cagCGCTGCTttctgtgca |
1 |
UAGCAGCG | m7b | (m7b->m6b) | -0.034000 | -0.006000 | No effect | |
hsa-miR-885-3p |
cagCGCTGCCTtctgtgca |
0 | AGGCAGCG | m8a | Created | -0.113000 | -0.148000 |
-0.030000 |
|
hsa-miR-3714 |
cagcgCTGCCTTCtgtgca |
0 | GAAGGCAG | m8a | Created | no TS | 0.094 | No effect | |
hsa-miR-503 |
cagCGCTGCTttctgtgca |
1 |
UAGCAGCG | m7b | (m7b->m6b) | -0.034 | -0.006 | No effect | |
hsa-miR-885-3p |
cagCGCTGCCTtctgtgca |
0 | AGGCAGCG | m8a | Created | -0.113 | -0.148 |
-0.03 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4267664C>T | COSN8022785 | 8033510 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-208a |
gtgttgagaCGTCTTAggt |
1 |
AUAAGACG | m7b | (m7b->m6c) | 0.026000 | no TS |
0.070000 |
|
hsa-miR-208b |
gtgttgagaCGTCTTAggt |
1 |
AUAAGACG | m7b | (m7b->m6c) | 0.026000 | no TS |
0.190000 |
|
hsa-miR-3617 |
gtgttgagATGTCTTaggt |
0 | AAAGACAU | m7b | Created | no TS | 0.138000 |
-0.010000 |
|
hsa-miR-641 |
gtgttgagATGTCTTaggt |
0 | AAAGACAU | m7b | Created | no TS | 0.159000 |
-0.110000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268141G>A | COSN8302132 | PCSI_0106_Pa_P | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2276 |
atgcCTTGCAGAtgcctca |
0 | UCUGCAAG | m8a | Created | no TS | -0.069000 |
-0.190000 |
|
hsa-miR-4772-3p |
atgccTTGCAGatgcctca |
0 | CCUGCAAC | m6b | Created | no TS | 0.014000 |
-2.280000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268332C>G | COSN14719502 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1307-3p |
aggtgaGCCGAGagagagc |
0 | ACUCGGCG | m6b | Created | no TS | -0.123000 |
-0.010000 |
|
hsa-miR-3187-5p |
aggtgaGCCCAGagagagc |
0 | CCUGGGCA | m6b | Disrupted | -0.062000 | no TS |
0.030000 |
|
hsa-miR-3191-5p |
aggtgagcCCAGAGAGagc |
2 |
CUCUCUGG | m8a | Disrupted | -0.203000 | -0.196000 |
0.440000 |
|
hsa-miR-326 |
aggtgagCCCAGAGagagc |
2 |
CCUCUGGG | m7b | Disrupted | -0.284000 | -0.119000 |
0.240000 |
|
hsa-miR-330-5p |
aggtgagCCCAGAGAgagc |
2 |
UCUCUGGG | m8a | Disrupted | -0.270000 | -0.126000 |
0.870000 |
|
hsa-miR-3615 |
aggtgagCCGAGAGAgagc |
0 | UCUCUCGG | m8a | Created | no TS | -0.266000 |
-4.660000 |
|
hsa-miR-378g |
aggtgAGCCCAGagagagc |
0 | ACUGGGCU | m7b | Disrupted | -0.155000 | no TS |
0.010000 |
|
hsa-miR-4284 |
agGTGAGCCCagagagagc |
1 |
GGGCUCAC | m8a | (m8a->m7a) | -0.083000 | -0.083000 |
0.080000 |
|
hsa-miR-4314 |
aggtgagCCCAGAGagagc |
4 |
CUCUGGGA | m7a | Disrupted | 0.028000 | 0.028000 | No effect | |
hsa-miR-4437 |
aggTGAGCCCAgagagagc |
0 | UGGGCUCA | m8a | Disrupted | -0.181000 | no TS |
6.940000 |
|
hsa-miR-4486 |
aggtgaGCCCAGagagagc |
0 | GCUGGGCG | m6b | Disrupted | -0.087000 | no TS | No effect | |
hsa-miR-4638-5p |
aggtgAGCCGAGagagagc |
0 | ACUCGGCU | m7b | Created | no TS | -0.271000 |
-0.050000 |
|
hsa-miR-4674 |
aggtGAGCCCAGagagagc |
1 |
CUGGGCUC | m8a | Disrupted | -0.171000 | -0.063000 |
1.830000 |
|
hsa-miR-612 |
aggtgaGCCCAGagagagc |
0 | GCUGGGCA | m6b | Disrupted | -0.062000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268334G>C | COSN14724217 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3187-5p |
gtgaGCCCAGagagagctg |
0 | CCUGGGCA | m6b | Disrupted | -0.062000 | no TS |
0.030000 |
|
hsa-miR-3191-5p |
gtgagcCCAGAGAGagctg |
2 |
CUCUCUGG | m8a | Disrupted | -0.203000 | -0.196000 | No effect | |
hsa-miR-326 |
gtgagCCCAGAGagagctg |
2 |
CCUCUGGG | m7b | Disrupted | -0.284000 | -0.119000 |
0.240000 |
|
hsa-miR-330-5p |
gtgagCCCAGAGAgagctg |
2 |
UCUCUGGG | m8a | Disrupted | -0.270000 | -0.126000 |
0.860000 |
|
hsa-miR-378g |
gtgAGCCCAGagagagctg |
0 | ACUGGGCU | m7b | (m7b->m6b) | -0.155000 | no TS |
0.010000 |
|
hsa-miR-4265 |
gtgaGCCCACAGagagctg |
0 | CUGUGGGC | m8a | Created | no TS | -0.139000 |
-4.070000 |
|
hsa-miR-4296 |
gtgaGCCCACAgagagctg |
0 | AUGUGGGC | m7b | Created | no TS | -0.120000 |
-2.770000 |
|
hsa-miR-4314 |
gtgagCCCAGAGagagctg |
4 |
CUCUGGGA | m7a | Disrupted | 0.028000 | 0.028000 | No effect | |
hsa-miR-4322 |
gtgaGCCCACAGagagctg |
0 | CUGUGGGC | m8a | Created | no TS | -0.120000 |
-4.170000 |
|
hsa-miR-4417 |
gtgAGCCCACagagagctg |
0 | GGUGGGCU | m7b | (m6b->m7b) | no TS | -0.205000 |
0.030000 |
|
hsa-miR-4486 |
gtgaGCCCAGagagagctg |
0 | GCUGGGCG | m6b | Disrupted | -0.087000 | no TS | No effect | |
hsa-miR-4674 |
gtGAGCCCAGagagagctg |
1 |
CUGGGCUC | m8a | (m8a->m7a) | -0.171000 | -0.171000 |
-0.150000 |
|
hsa-miR-612 |
gtgaGCCCAGagagagctg |
0 | GCUGGGCA | m6b | Disrupted | -0.062000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268362G>T | COSN1349700 | HCC49T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4695-5p |
accccctcgGCCTCCTGca |
2 |
CAGGAGGC | m8a | (m8a->m7b) | 0.000000 | 0.034000 | No effect | |
hsa-miR-4695-5p |
accccctcgGCCTCCTGca |
2 |
CAGGAGGC | m8a | (m8a->m7b) | 0.000000 | 0.034000 | No effect | |
hsa-miR-4695-5p |
accccctcgGCCTCCTGca |
0 | CAGGAGGC | m8a | (m8a->m7b) | 0 | 0.034 |
5.84 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268459G>A | COSN4965606 | SS6003302 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1271-3p |
ttataAGGCACacttcact |
0 | AGUGCCUG | m6b | Created | no TS | -0.127000 |
-12.360000 |
|
hsa-miR-373-3p |
ttataaggcGCACTTCact |
0 | GAAGUGCU | m7a | (m7a->m6b) | NA | NA |
0.710000 |
|
hsa-miR-550a-3-5p |
ttataAGGCACacttcact |
0 | AGUGCCUG | m6b | Created | no TS | -0.124000 | No effect | |
hsa-miR-550a-5p |
ttataAGGCACacttcact |
0 | AGUGCCUG | m6b | Created | no TS | -0.124000 | No effect | |
hsa-miR-550b-2-5p |
ttataAGGCACActtcact |
0 | AUGUGCCU | m7b | Created | no TS | -0.205000 |
-0.050000 |
|
hsa-miR-595 |
ttataaggCACACTTCact |
0 | GAAGUGUG | m8a | Created | no TS | -0.036000 |
-0.130000 |
|
hsa-miR-648 |
ttataagGCACACTTcact |
0 | AAGUGUGC | m8a | Created | no TS | -0.132000 |
-0.590000 |
|
hsa-miR-1271-3p |
ttataAGGCACacttcact |
0 | AGUGCCUG | m6b | Created | no TS | -0.127000 |
-12.360000 |
|
hsa-miR-373-3p |
ttataaggcGCACTTCact |
0 | GAAGUGCU | m7a | (m7a->m6b) | NA | NA |
0.710000 |
|
hsa-miR-550a-3-5p |
ttataAGGCACacttcact |
0 | AGUGCCUG | m6b | Created | no TS | -0.124000 | No effect | |
hsa-miR-550a-5p |
ttataAGGCACacttcact |
0 | AGUGCCUG | m6b | Created | no TS | -0.124000 | No effect | |
hsa-miR-550b-2-5p |
ttataAGGCACActtcact |
0 | AUGUGCCU | m7b | Created | no TS | -0.205000 |
-0.050000 |
|
hsa-miR-595 |
ttataaggCACACTTCact |
0 | GAAGUGUG | m8a | Created | no TS | -0.036000 |
-0.130000 |
|
hsa-miR-648 |
ttataagGCACACTTcact |
0 | AAGUGUGC | m8a | Created | no TS | -0.132000 |
-0.590000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268584C>T | COSN6882346 | RK070_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268677G>A | COSN524273 | TCGA-BH-A1ET-01 | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-221-3p |
tggcacacaATGTAGCTat |
0 | AGCUACAU | m8a | (m7b->m8a) | no TS | -0.180000 |
-0.400000 |
|
hsa-miR-222-3p |
tggcacacaATGTAGCTat |
0 | AGCUACAU | m8a | (m7b->m8a) | no TS | -0.152000 |
0.330000 |
|
hsa-miR-4289 |
tggcaCACAATGtagctat |
0 | GCAUUGUG | m7b | Created | no TS | -0.110000 |
-0.040000 |
|
hsa-miR-892a |
tggcACACAGTGtagctat |
4 |
CACUGUGU | m8a | Disrupted | -0.122000 | no TS |
0.790000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268690C>T | COSN519384 | TCGA-29-1783-01 | [ovary][NS][carcinoma][serous_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1185-5p |
agcTATCCTCctgacgagc |
0 | AGAGGAUA | m7b | (m7b->m6b) | -0.104000 | no TS |
0.970000 |
|
hsa-miR-3154 |
agctatCCTTCTGacgagc |
0 | CAGAAGGG | m7a | Created | -0.065000 | -0.065000 | No effect | |
hsa-miR-3679-5p |
agcTATCCTCctgacgagc |
0 | UGAGGAUA | m7b | (m7b->m6b) | -0.076000 | no TS |
0.010000 |
|
hsa-miR-4433-3p |
agctatcCTCCTGacgagc |
2 |
ACAGGAGU | m6b | Disrupted | -0.080000 | no TS | No effect | |
hsa-miR-4459 |
agctatCCTCCTGacgagc |
1 |
CCAGGAGG | m7b | Disrupted | -0.269000 | 0.027000 | No effect | |
hsa-miR-4695-5p |
agctatCCTCCTGacgagc |
2 |
CAGGAGGC | m7a | Disrupted | 0.000000 | 0.000000 | No effect | |
hsa-miR-4768-3p |
agctatcCTCCTGacgagc |
2 |
CCAGGAGA | m6b | Disrupted | 0.124000 | 0.198000 |
0.060000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.4268734G>A | COSN6882347 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-345-5p |
ctccccgtGAGTCAGCgtc |
0 | GCUGACUC | m8a | Created | no TS | -0.113000 |
-0.030000 |
|
hsa-miR-3680-5p |
ctccccGTGAGTCagcgtc |
0 | GACUCACU | m7a | Created | NA | NA |
-0.010000 |
|
hsa-miR-4798-3p |
ctcccCGTGAGTcagcgtc |
0 | AACUCACG | m7b | Created | no TS | -0.109000 |
-0.510000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.4268854G>A | COSN8022794 | 8067246 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
4266153 | rs75528200 | C | C |
hsa-miR-4271 hsa-miR-4725-3p hsa-miR-542-5p hsa-miR-6727-5p hsa-miR-6777-5p hsa-miR-6780b-5p hsa-miR-6889-5p |
1 1 1 1 1 1 1 |
CTTCCCCgaacac CTTCCCCgaacac ctTCCCCGAacac cttCCCCGAAcac ctTCCCCGAacac CTTCCCCgaacac ctTCCCCGAacac |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
-0.044 -0.034 -0.139 -0.153 -0.12 -0.053 -0.127 |
A |
hsa-miR-204-3p hsa-miR-3192-5p hsa-miR-4314 hsa-miR-4646-5p hsa-miR-4747-5p hsa-miR-5196-5p hsa-miR-619-5p hsa-miR-6506-5p |
1 1 1 1 1 1 1 1 |
cTTCCCAGAacac ctTCCCAGAacac ctTCCCAGAAcac cTTCCCAGAacac CTTCCCAgaacac CTTCCCAgaacac ctTCCCAGAacac ctTCCCAGAacac |
Created Created Created Created Created Created Created Created |
N N N N N N N N |
-0.1 -0.02 -0.154 -0.089 -0.112 -0.116 -0.026 -0.016 |
|||
4267062 | rs77952272 | G | G |
hsa-miR-2277-3p hsa-miR-3660 hsa-miR-4526 hsa-miR-6825-3p |
2 2 2 0 |
tgtGCTGTCAgcg tgtgCTGTCAGcg tgtgCTGTCAGcg tgtgctGTCAGCG |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.014 0.082 0.091 -0.09 |
A |
hsa-miR-585-5p |
0 |
TGTGCTAtcagcg |
Created |
N |
0.064 |
|||
4267306 | rs151091785 | C | C |
hsa-miR-3153 hsa-miR-3154 hsa-miR-6733-5p hsa-miR-6739-5p hsa-miR-7515 |
0 |
tcccttCTTTCCC tCCCTTCTttccc tcccttCTTTCCC tcccttCTTTCCC TCCCTTCtttccc |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
0.038 0.028 0.094 0.066 0.068 |
G |
hsa-miR-4261 |
1 |
tccctTGTTTCCc |
Created |
N |
0.118 |
|||
4268248 | rs71527480 | G | G |
hsa-miR-2114-3p hsa-miR-221-5p hsa-miR-660-3p hsa-miR-6791-3p hsa-miR-6823-3p hsa-miR-6829-3p hsa-miR-8073 |
6 3 3 3 6 3 3 |
ggccagGAGGCTC gGCCAGGAggctc ggcCAGGAGGctc ggccAGGAGGCtc ggccagGAGGCTC ggccAGGAGGCtc gGCCAGGAggctc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
-0.044 -0.064 No Change -0.076 -0.063 -0.048 -0.064 |
A |
hsa-miR-1237-3p hsa-miR-3176 hsa-miR-3190-5p hsa-miR-3614-3p hsa-miR-3922-3p |
3 2 2 5 2 |
ggcCAGAAGGctc GGCCAGAaggctc GGCCAGAaggctc ggccaGAAGGCTc GGCCAGAaggctc |
Created Created Created Created Created |
N N N N N |
0.019 -0.073 -0.132 -0.038 -0.08 |
|||
4268254 | rs140793242 | C | C |
hsa-miR-2114-3p hsa-miR-6823-3p |
2 2 |
GAGGCTCcgtctg GAGGCTCcgtctg |
Disrupted Disrupted |
N N |
-0.044 -0.063 |
T |
hsa-miR-7109-3p |
2 |
GAGGCTTcgtctg |
Created |
N |
-0.033 |
|||
4268331 | rs201052629 | - | - |
hsa-miR-1285-3p hsa-miR-3187-5p hsa-miR-3191-5p hsa-miR-326 hsa-miR-330-5p hsa-miR-378g hsa-miR-4284 hsa-miR-4437 hsa-miR-4486 hsa-miR-4674 hsa-miR-5189-5p hsa-miR-518c-5p hsa-miR-612 hsa-miR-6764-3p hsa-miR-6824-3p hsa-miR-6860 |
0 |
ggtgaGCCCAGAgag ggtgaGCCCAGAgag ggtgagcCCAGAGAg ggtgagCCCAGAGAg ggtgagCCCAGAGAg ggtgAGCCCAGAgag gGTGAGCCcagagag ggTGAGCCCAgagag ggtgaGCCCAGAgag ggtGAGCCCAgagag ggtgaGCCCAGAgag ggtgagcCCAGAGAg ggtgaGCCCAGAgag ggtgagcCCAGAGAg ggtgagcCCAGAGAg ggtgaGCCCAGAgag |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N N N N N N N N |
-0.059 -0.062 -0.007 -0.165 -0.144 -0.155 0.002 -0.181 -0.087 -0.108 -0.059 -0.017 -0.062 -0.029 -0.029 -0.062 |
GA |
hsa-miR-6741-3p |
0 |
ggtGAGCCGAcagagag |
Unknown |
N |
-0.121 |
|||
4268332 | rs1562541 | G | C |
hsa-miR-1285-3p hsa-miR-3187-5p hsa-miR-3191-5p hsa-miR-326 hsa-miR-330-5p hsa-miR-378g hsa-miR-4437 hsa-miR-4486 hsa-miR-4674 hsa-miR-5189-5p hsa-miR-518c-5p hsa-miR-612 hsa-miR-6764-3p hsa-miR-6817-3p hsa-miR-6824-3p hsa-miR-6860 |
0 |
tgaGCCCAGAgag tgaGCCCAGAgag tgagcCCAGAGAg tgagCCCAGAGAg tgagCCCAGAGAg tgAGCCCAGAgag TGAGCCCAgagag tgaGCCCAGAgag tGAGCCCAgagag tgaGCCCAGAgag tgagcCCAGAGAg tgaGCCCAGAgag tgagcCCAGAGAg tgagccCAGAGAG tgagcCCAGAGAg tgaGCCCAGAgag |
Created Created Created Created Created Created Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N N N N N N N |
-0.059 -0.062 -0.007 -0.165 -0.144 -0.155 -0.181 -0.087 -0.108 -0.059 -0.017 -0.062 -0.029 -0.068 -0.029 -0.062 |
G |
hsa-miR-1307-3p hsa-miR-3615 hsa-miR-4638-5p hsa-miR-6741-3p hsa-miR-7110-3p |
0 |
tgaGCCGAGAgag tgagCCGAGAGAg tgAGCCGAGAgag tGAGCCGAgagag tgagccGAGAGAG |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.123 -0.266 -0.271 -0.118 -0.096 |
|||
4268333 | rs113223220 | A | A |
hsa-miR-1285-3p hsa-miR-3187-5p hsa-miR-3191-5p hsa-miR-326 hsa-miR-330-5p hsa-miR-378g hsa-miR-4437 hsa-miR-4486 hsa-miR-4674 hsa-miR-5189-5p hsa-miR-518c-5p hsa-miR-612 hsa-miR-6764-3p hsa-miR-6817-3p hsa-miR-6824-3p hsa-miR-6860 hsa-miR-6873-3p hsa-miR-7110-3p |
0 |
gaGCCCAGAgaga gaGCCCAGAgaga gagcCCAGAGAga gagCCCAGAGAga gagCCCAGAGAga gAGCCCAGAgaga GAGCCCAgagaga gaGCCCAGAgaga GAGCCCAgagaga gaGCCCAGAgaga gagcCCAGAGAga gaGCCCAGAgaga gagcCCAGAGAga gagccCAGAGAGA gagcCCAGAGAga gaGCCCAGAgaga gagcccAGAGAGA gagcccAGAGAGA |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N N N N N N N N N |
-0.059 -0.062 -0.007 -0.165 -0.144 -0.155 -0.119 -0.087 -0.108 -0.059 -0.017 -0.062 -0.029 -0.033 -0.029 -0.062 0.074 0.02 |
T |
hsa-miR-1266-5p hsa-miR-3127-5p hsa-miR-3664-3p hsa-miR-3918 hsa-miR-4518 hsa-miR-5088-5p |
0 |
gagCCCTGAGAga gaGCCCTGAgaga gagcCCTGAGAga gaGCCCTGAgaga gagCCCTGAGAga GAGCCCTgagaga |
Created Created Created Created Created Created |
N N N N N N |
-0.133 -0.13 -0.011 -0.073 -0.154 -0.137 |
|||
4268334 | rs1562540 | G | G |
hsa-miR-1285-3p hsa-miR-3187-5p hsa-miR-3191-5p hsa-miR-326 hsa-miR-330-5p hsa-miR-378g hsa-miR-4486 hsa-miR-5189-5p hsa-miR-518c-5p hsa-miR-612 hsa-miR-6764-3p hsa-miR-6817-3p hsa-miR-6824-3p hsa-miR-6860 hsa-miR-6873-3p hsa-miR-7110-3p |
0 |
aGCCCAGAgagag aGCCCAGAgagag agcCCAGAGAgag agCCCAGAGAgag agCCCAGAGAgag AGCCCAGAgagag aGCCCAGAgagag aGCCCAGAgagag agcCCAGAGAgag aGCCCAGAgagag agcCCAGAGAgag agccCAGAGAGAg agcCCAGAGAgag aGCCCAGAgagag agcccAGAGAGAg agcccaGAGAGAG |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N N N N N N N |
-0.059 -0.062 -0.007 -0.165 -0.144 -0.155 -0.087 -0.059 -0.017 -0.062 -0.029 -0.031 -0.029 -0.062 0.074 -0.014 |
C |
hsa-miR-134-3p hsa-miR-4265 hsa-miR-4296 hsa-miR-4322 hsa-miR-4417 hsa-miR-7114-5p |
0 |
agCCCACAGAgag aGCCCACAgagag aGCCCACAgagag aGCCCACAgagag AGCCCACAgagag agcCCACAGAgag |
Created Created Created Created Created Created |
N N N N N N |
-0.187 -0.139 -0.12 -0.12 -0.205 -0.037 |
|||
4268499 | rs35546130 | - | - |
hsa-miR-1227-5p hsa-miR-128-1-5p hsa-miR-128-2-5p hsa-miR-4287 hsa-miR-4292 hsa-miR-4308 hsa-miR-4469 hsa-miR-4685-3p hsa-miR-6762-5p hsa-miR-6791-5p hsa-miR-6845-5p hsa-miR-6852-5p hsa-miR-6867-3p hsa-miR-7113-3p |
1 1 1 2 2 2 2 2 1 2 1 2 3 2 |
GGCCCCAgggaga GGCCCCAgggaga GGCCCCAgggaga ggccccAGGGAGA ggcCCCAGGGAga ggccCCAGGGAga ggccccAGGGAGA ggccccAGGGAGA GGCCCCAgggaga ggcCCCAGGGAga GGCCCCAgggaga ggCCCCAGGgaga ggccccAGGGAGA ggcccCAGGGAGA |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N N N N N N |
-0.005 -0.003 -0.003 -0.043 -0.151 -0.08 -0.038 -0.05 -0.002 -0.146 -0.002 -0.015 -0.015 -0.189 |
G |
hsa-miR-331-3p hsa-miR-6801-3p hsa-miR-6810-3p |
2 2 2 |
ggccCCAGGGGAga ggcccCAGGGGAga ggcccCAGGGGAga |
Unknown Unknown Unknown |
N N N |
-0.272 -0.083 -0.086 |
|||
4268704 | rs189213134 | C | C |
hsa-miR-483-5p |
2 |
gcaaCCCGTCTgc |
Disrupted |
N |
-0.215 |
T |
hsa-miR-1324 hsa-miR-3166 hsa-miR-4524b-3p |
2 2 2 |
gcaacCTGTCTGc gcaaccTGTCTGC gcaaCCTGTCTgc |
Created Created Created |
N N N |
-0.076 -0.111 -0.149 |