SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_005506
Gene Symbol: SCARB2
Description: Homo sapiens scavenger receptor class B, member 2 (SCARB2), transcript variant 2, mRNA.
Gene Location: chr4(-):77079891-77135052
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.76159459A>G ICGC_756D424A-2A78-11E2-96E7-04FD496BB9B8 CPCG_0102_Pr_P_P1 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4284 tacaggcGTGAGCCaccgg
 0 GGGCUCAC m7b Created no TS -0.147 No effect


Mutation Mutation ID Sample Name Cancer Type
chr4:g.76159879T>C COSN5063872 HX25T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr4:g.76160252A>T COSN7843309 8062308 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-145-5p ttgtttaaAACTGGAtttc
 3
 GUCCAGUU m7b Disrupted -0.087000 no TS 1.750000
hsa-miR-4328 ttgtttAAAACTGGatttc
 0 CCAGUUUU m8a Disrupted 0.052000 no TS 0.010000
hsa-miR-488-5p ttgtttaaATCTGGatttc
 0 CCCAGAUA m6b Created no TS -0.036000 -0.490000
hsa-miR-5195-3p ttgtttaaAACTGGATttc
 3
 AUCCAGUU m8a Disrupted -0.050000 no TS 0.890000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.76160540A>G COSN6843769 RK190_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-382-3p gacaGAATGATggatgttt
 2
 AAUCAUUC m7b Disrupted 0.093000 0.091000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr4:g.76161450T>G COSN7843310 8061178 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3065-5p tatagtaatTTTGTTGttg
 0 UCAACAAA m7b (m7b->m6b) -0.129000 no TS 3.830000
hsa-miR-323a-3p tataGTAATGTtgttgttg
 0 CACAUUAC m7b Created no TS -0.111000 -1.210000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.76161564G>A COSN523705 TCGA-BH-A0HP-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3150a-5p ttctggccaGAGGTTaaag
 0 CAACCUCG m6b Disrupted -0.124000 no TS 1.880000
hsa-miR-3150b-5p ttctggccaGAGGTTaaag
 0 CAACCUCG m6b Disrupted -0.124000 no TS 4.250000
hsa-miR-3176 ttctGGCCAGaggttaaag
 4
 ACUGGCCU m6b Disrupted -0.163000 no TS 0.060000
hsa-miR-3187-3p ttcTGGCCAAaggttaaag
 0 UUGGCCAU m7a (m6b->m7a) no TS -0.163000 -0.480000
hsa-miR-3190-5p ttcTGGCCAGAggttaaag
 3
 UCUGGCCA m8a Disrupted -0.512000 -0.128000 -0.070000
hsa-miR-4701-5p ttcTGGCCAAaggttaaag
 0 UUGGCCAC m7a (m6b->m7a) no TS -0.175000 -0.010000
hsa-miR-588 ttcTGGCCAAaggttaaag
 0 UUGGCCAC m7a (m6b->m7a) no TS -0.168000 -0.080000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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