SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001190413
Gene Symbol: RPH3AL
Description: Homo sapiens rabphilin 3A-like (without C2 domains) (RPH3AL), transcript variant 2, mRNA.
Gene Location: chr17(-):62179-202633
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.212855G>A COSN6659607 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3140-5p aagagcagcATTCAGGTgc
 3
 ACCUGAAU m8a (m7a->m8a) -0.069000 -0.070000 -1.720000

Mutation Mutation ID Sample Name Cancer Type
chr17:g.213089A>T ICGC_AF26E2F2-2A78-11E2-8335-12FD496BB9B8 CPCG_0102_Pr_P_P2 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1236 tatttttaGAAGAGatggg
 0 CCUCUUCC m6b Disrupted -0.04 -0.02 0.55
hsa-miR-3675-3p tatttttagTAGAGATGgg
 0 CAUCUCUA m8a (m7a->m8a) no TS -0.006 No effect
hsa-miR-4684-5p tatttttaGTAGAGAtggg
 0 CUCUCUAC m7b Created no TS -0.108 -4.75
hsa-miR-4799-5p tattTTTAGAagagatggg
 0 AUCUAAAU m6b Disrupted 0.055 no TS 0.21


Mutation Mutation ID Sample Name Cancer Type
chr17:g.213306G>A COSN6659703 CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr17:g.213327C>T COSN9672407 C0021T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-149-3p cccCCCTCCCatgggctgg
 0 AGGGAGGG m7b (m7b->m6c) -1.167000 -0.955000 No effect
hsa-miR-30b-3p ccccCCTCCCAtgggctgg
 0 CUGGGAGG m7b Disrupted -0.392000 -0.387000 No effect
hsa-miR-3689a-3p ccccCCTCCCAtgggctgg
 0 CUGGGAGG m7b Disrupted -0.422000 -0.426000 No effect
hsa-miR-3689b-3p ccccCCTCCCAtgggctgg
 0 CUGGGAGG m7b Disrupted -0.422000 -0.426000 No effect
hsa-miR-3689c ccccCCTCCCAtgggctgg
 0 CUGGGAGG m7b Disrupted -0.422000 -0.426000 No effect
hsa-miR-4266 ccccCCTCCTAtgggctgg
 0 CUAGGAGG m7b Created no TS -0.040000 No effect
hsa-miR-4641 cccccctccCATGGGCtgg
 1
 UGCCCAUG m7b (m7b->m6b) -0.193000 -0.157000 No effect
hsa-miR-4695-5p ccccCCTCCTatgggctgg
 2
 CAGGAGGC m6b Created -0.258000 -0.303000 No effect
hsa-miR-4728-5p cccCCCTCCCAtgggctgg
 0 UGGGAGGG m8a Disrupted -1.229000 -1.006000 No effect
hsa-miR-4779 cccCCCTCCTAtgggctgg
 0 UAGGAGGG m8a Created no TS -0.158000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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