SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_020216
Gene Symbol: RNPEP
Description: Homo sapiens arginyl aminopeptidase (aminopeptidase B) (RNPEP), mRNA.
Gene Location: chr1(+):201951765-201975275
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.202005801->A ICGC_ssm_v3_48807 HCC118T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4772-5p tcCCTGATCAacttcctgg
 1
 UGAUCAGG m8a (m8a->m7a) -0.408000 -0.417000 -0.820000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.202005897A>G COSN1096106 HCC61T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3919 tacTTCTCTGtagcccact
 0 GCAGAGAA m7b (m6b->m7b) no TS -0.074000 -0.010000
hsa-miR-3976 tactTCTCTATAgcccact
 1
 UAUAGAGA m8a Disrupted -0.233000 no TS 0.030000
hsa-miR-4797-5p tacttCTCTGTagcccact
 0 GACAGAGU m6b Created no TS -0.058000 No effect
hsa-miR-548v tacttctCTGTAGCccact
 0 AGCUACAG m7b Created no TS -0.142000 -4.300000
hsa-miR-3919 tacTTCTCTGtagcccact
 0 GCAGAGAA m7b (m6b->m7b) no TS -0.074000 -0.010000
hsa-miR-3976 tactTCTCTATAgcccact
 1
 UAUAGAGA m8a Disrupted -0.233000 no TS 0.030000
hsa-miR-4797-5p tacttCTCTGTagcccact
 0 GACAGAGU m6b Created no TS -0.058000 No effect
hsa-miR-548v tacttctCTGTAGCccact
 0 AGCUACAG m7b Created no TS -0.142000 -4.300000
hsa-miR-3919 tacTTCTCTGtagcccact
 0 GCAGAGAA m7b (m6b->m7b) no TS -0.074000 -0.010000
hsa-miR-3976 tactTCTCTATAgcccact
 1
 UAUAGAGA m8a Disrupted -0.233000 no TS 0.030000
hsa-miR-4797-5p tacttCTCTGTagcccact
 0 GACAGAGU m6b Created no TS -0.058000 No effect
hsa-miR-548v tacttctCTGTAGCccact
 0 AGCUACAG m7b Created no TS -0.142000 -4.300000
hsa-miR-3919 tacTTCTCTGtagcccact
 0 GCAGAGAA m7b (m6b->m7b) no TS -0.074 -0.01
hsa-miR-3976 tactTCTCTATAgcccact
 1
 UAUAGAGA m8a Disrupted -0.233 no TS 0.03
hsa-miR-4797-5p tacttCTCTGTagcccact
 0 GACAGAGU m6b Created no TS -0.058 No effect
hsa-miR-548v tacttctCTGTAGCccact
 0 AGCUACAG m7b Created no TS -0.142 -4.3

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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