SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_001242851
Gene Symbol:	RNF146
Description:	Homo sapiens ring finger protein 146 (RNF146), transcript variant 1, mRNA.
Gene Location:	chr6(+):127587826-127609705
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr6:g.127287731G>T			COSN8493601		824_T		[lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-652-5p	ggttgaaAGGGTTacctgt	0	CAACCCUA	m6b	Disrupted	-0.155000	no TS	2.840000

Mutation			Mutation ID		Sample Name		Cancer Type
chr6:g.127288310T>A			COSN2140278		RK032_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-577	tctgcaTTTATCTttttga	0	UAGAUAAA	m7b	Created	no TS	-0.099000	-1.010000
hsa-miR-577	tctgcaTTTATCTttttga	0	UAGAUAAA	m7b	Created	no TS	-0.099000	-1.010000
hsa-miR-577	tctgcaTTTATCTttttga	0	UAGAUAAA	m7b	Created	no TS	-0.099	-1.01

Mutation			Mutation ID		Sample Name		Cancer Type
chr6:g.127288335T>G			COSN8493602		J36_T		[lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-944	aatttATAATTTaataaat	1	AAAUUAUU	m7a	Disrupted	0.025000	0.025000	1.638600

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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