SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_020630
Gene Symbol: RET
Description: Homo sapiens ret proto-oncogene (RET), transcript variant 4, mRNA.
Gene Location: chr10(+):43572516-43622952
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.43127084T>C cosmic_v64_1760542 Leukemia/T-ALL
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-223-5p ggataAATACACaaatctg
 0 CGUGUAUU m7b Created no TS -0.236 -1.12
hsa-miR-5010-3p ggataaatACACAAAtctg
 0 UUUUGUGU m7b Created no TS -0.11 -1.16
hsa-miR-568 ggataaaTATACAaatctg
 1
 AUGUAUAA m6b Disrupted -0.044 no TS 1.98
hsa-miR-599 ggataaatACACAAatctg
 0 GUUGUGUC m6b Created no TS -0.089 -6.56

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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