| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001136204 |
|---|---|
| Gene Symbol: | RCC2 |
| Description: | Homo sapiens regulator of chromosome condensation 2 (RCC2), transcript variant 2, mRNA. |
| Gene Location: | chr1(-):17733250-17765057 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.17407068A>C | COSN6430621 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1305 |
agaTTGAAAAatgggcttc |
1 |
UUUUCAAC | m7a | (m7a->m6b) | 0.036000 | no TS |
0.230000 |
| hsa-miR-4641 |
agattgaaaCATGGGCttc |
0 | UGCCCAUG | m7b | (m6b->m7b) | no TS | -0.283000 |
-1.810000 |
| hsa-miR-4716-5p |
agattgaAACATGGgcttc |
1 |
UCCAUGUU | m7b | Created | -0.067000 | -0.182000 |
-0.070000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.17408329A>G | COSN6009877 | RK175_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4719 |
aacATTTGTGtcagttgag |
0 | UCACAAAU | m7b | (m6c->m7b) | no TS | 0.098000 |
-4.220000 |
| hsa-miR-642a-3p |
aacattTGTGTCagttgag |
0 | AGACACAU | m6b | Created | no TS | -0.023000 | No effect |
| hsa-miR-642b-3p |
aacattTGTGTCagttgag |
0 | AGACACAU | m6b | Created | no TS | -0.027000 |
-0.010000 |
| hsa-miR-888-3p |
aacatttgTGTCAGTtgag |
0 | GACUGACA | m7b | Created | no TS | -0.046000 |
-0.010000 |