| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_003475 |
|---|---|
| Gene Symbol: | RASSF7 |
| Description: | Homo sapiens Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 (RASSF7), transcript variant 2, mRNA. |
| Gene Location: | chr11(+):561449-564025 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.563854A>G | COSN1134824 | HCC25T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3189-3p |
aggcCCCAAGGGccacgac |
0 | CCCUUGGG | m8a | Created | no TS | -0.096000 |
-7.170000 |
| hsa-miR-328 |
aggccccaAGGGCCAcgac |
0 | CUGGCCCU | m7b | Created | no TS | -0.195000 |
-0.010000 |
| hsa-miR-4260 |
agGCCCCAAGggccacgac |
4 |
CUUGGGGC | m8a | (m7a->m8a) | -0.333000 | -0.130000 |
0.580000 |
| hsa-miR-663b |
aggccccaaGGGCCACgac |
0 | GGUGGCCC | m7b | (m6c->m7b) | no TS | -0.261000 |
-2.430000 |
| hsa-miR-3189-3p |
aggcCCCAAGGGccacgac |
0 | CCCUUGGG | m8a | Created | no TS | -0.096000 |
-7.170000 |
| hsa-miR-328 |
aggccccaAGGGCCAcgac |
0 | CUGGCCCU | m7b | Created | no TS | -0.195000 |
-0.010000 |
| hsa-miR-4260 |
agGCCCCAAGggccacgac |
4 |
CUUGGGGC | m8a | (m7a->m8a) | -0.333000 | -0.130000 |
0.580000 |
| hsa-miR-663b |
aggccccaaGGGCCACgac |
0 | GGUGGCCC | m7b | (m6c->m7b) | no TS | -0.261000 |
-2.430000 |
| hsa-miR-3189-3p |
aggcCCCAAGGGccacgac |
0 | CCCUUGGG | m8a | Created | no TS | -0.096 |
-7.17 |
| hsa-miR-328 |
aggccccaAGGGCCAcgac |
0 | CUGGCCCU | m7b | Created | no TS | -0.195 |
-0.01 |
| hsa-miR-4260 |
agGCCCCAAGggccacgac |
4 |
CUUGGGGC | m8a | (m7a->m8a) | -0.333 | -0.13 |
0.58 |
| hsa-miR-663b |
aggccccaaGGGCCACgac |
0 | GGUGGCCC | m7b | (m6c->m7b) | no TS | -0.261 |
-2.43 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.564013C>T | COSN8684850 | AOCS-159-1-9 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-2682-5p |
taaACTGCCTGaagcagct |
0 | CAGGCAGU | m8a | Created | -0.109000 | -0.374000 |
-3.590000 |
| hsa-miR-3181 |
taaactGCCCGAagcagct |
0 | AUCGGGCC | m6b | Disrupted | -0.276000 | no TS |
6.970000 |
| hsa-miR-34b-5p |
taaACTGCCTgaagcagct |
0 | UAGGCAGU | m7b | (m6b->m7b) | -0.100000 | -0.375000 |
-2.250000 |
| hsa-miR-3977 |
taaactgccTGAAGCAgct |
0 | GUGCUUCA | m7b | (m6c->m7b) | no TS | -0.107000 |
-1.280000 |
| hsa-miR-4269 |
taaacTGCCTGaagcagct |
0 | GCAGGCAC | m6b | Created | no TS | -0.174000 | No effect |
| hsa-miR-449c-5p |
taaACTGCCTgaagcagct |
0 | UAGGCAGU | m7b | (m6b->m7b) | -0.109000 | -0.402000 |
-2.720000 |
| hsa-miR-4514 |
taaaCTGCCTGaagcagct |
0 | ACAGGCAG | m7b | Created | -0.170000 | -0.640000 |
-9.500000 |
| hsa-miR-4692 |
taaaCTGCCTGAagcagct |
0 | UCAGGCAG | m8a | Created | -0.170000 | -0.629000 |
-4.490000 |
| hsa-miR-4742-5p |
taaacTGCCTGAagcagct |
1 |
UCAGGCAA | m7a | Created | -0.077000 | -0.268000 |
-2.840000 |
| hsa-miR-4750 |
taaactGCCCGAagcagct |
0 | CUCGGGCG | m6b | Disrupted | -0.309000 | no TS |
14.640000 |