| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_133178 |
|---|---|
| Gene Symbol: | PTPRU |
| Description: | Homo sapiens protein tyrosine phosphatase, receptor type, U (PTPRU), transcript variant 4, mRNA. |
| Gene Location: | chr1(+):29563027-29653325 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.29326533G>A | COSN10046910 | C0094T | [kidney][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-18a-3p |
ttgtggggaAGGGCAGTgt |
0 | ACUGCCCU | m8a | (m7b->m8a) | no TS | -0.146000 |
0.070000 |
| hsa-miR-1913 |
ttgtggggaGGGGCAGtgt |
9 |
UCUGCCCC | m7b | (m7b->m6c) | -0.420000 | -0.231000 |
3.590000 |
| hsa-miR-324-3p |
ttgtggggaGGGGCAGTgt |
9 |
ACUGCCCC | m8a | (m8a->m7b) | -0.392000 | -0.212000 |
-0.190000 |
| hsa-miR-4749-3p |
ttgtgggGAGGGGCagtgt |
1 |
CGCCCCUC | m7b | Disrupted | -0.385000 | no TS |
3.570000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.29326628G>T | COSN7989962 | ASHPC_0003_Pa_P_2 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |