| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_198964 |
|---|---|
| Gene Symbol: | PTHLH |
| Description: | Homo sapiens parathyroid hormone-like hormone (PTHLH), transcript variant 2, mRNA. |
| Gene Location: | chr12(-):28115253-28122894 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr12:g.27962469G>T | COSN9747627 | C0073T | [kidney][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-18b-3p |
caaccTAGGGCAagttact |
3 |
UGCCCUAA | m7a | Disrupted | -0.448000 | -0.228000 |
0.520000 |
| hsa-miR-192-5p |
caaccTAGGTCAagttact |
0 | CUGACCUA | m7b | Created | no TS | -0.359000 |
-3.160000 |
| hsa-miR-215 |
caaccTAGGTCAagttact |
0 | AUGACCUA | m7b | Created | no TS | -0.359000 |
-4.330000 |
| hsa-miR-3157-3p |
caaccTAGGGCAagttact |
3 |
CUGCCCUA | m7b | Disrupted | -0.409000 | no TS |
0.080000 |
| hsa-miR-874 |
caacctAGGGCAagttact |
3 |
CUGCCCUG | m6b | Disrupted | -0.166000 | no TS |
0.050000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr12:g.27962749T>A | COSN8707852 | AOCS-056-1-X | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4424 |
aattaaatTTAACTCTggt |
0 | AGAGUUAA | m8a | Disrupted | -0.274000 | -0.095000 |
0.260000 |
| hsa-miR-4775 |
aattAAATTAAactctggt |
0 | UUAAUUUU | m7a | Created | no TS | 0.078000 |
-0.010000 |
| hsa-miR-513a-3p |
aattAAATTTAactctggt |
5 |
UAAAUUUC | m7a | Disrupted | 0.134000 | 0.051000 | No effect |
| hsa-miR-513c-3p |
aattAAATTTAactctggt |
5 |
UAAAUUUC | m7a | Disrupted | 0.134000 | 0.051000 | No effect |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr12:g.27962880G>A | COSN1568972 | RK041_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-425-5p |
cagcatcaTGTCATaaacg |
2 |
AAUGACAC | m6b | Disrupted | -0.214000 | -0.156000 |
0.110000 |
| hsa-miR-425-5p |
cagcatcaTGTCATaaacg |
0 | AAUGACAC | m6b | Disrupted | -0.214 | -0.156 |
0.11 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr12:g.27963186T>A | COSN5320632 | RK090_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-124-3p |
ttgtcTGCCTTAaagcagt |
1 |
UAAGGCAC | m7a | Disrupted | -0.253000 | -0.130000 |
2.820000 |
| hsa-miR-183-5p |
ttgtcTGCCATAaagcagt |
0 | UAUGGCAC | m7a | Created | no TS | -0.151000 |
-6.210000 |
| hsa-miR-3714 |
ttgtCTGCCTTaaagcagt |
1 |
GAAGGCAG | m7b | Disrupted | -0.859000 | -0.507000 |
0.670000 |
| hsa-miR-3910 |
ttgtcTGCCTTaaagcagt |
1 |
AAAGGCAU | m6b | Disrupted | -0.416000 | -0.288000 |
0.100000 |
| hsa-miR-4477b |
ttgtctgCCTTAAagcagt |
1 |
AUUAAGGA | m6b | Disrupted | -0.129000 | -0.091000 |
0.510000 |
| hsa-miR-506-3p |
ttgtcTGCCTTAaagcagt |
1 |
UAAGGCAC | m7a | Disrupted | -0.270000 | -0.123000 |
1.690000 |
| hsa-miR-940 |
ttgtCTGCCTTaaagcagt |
0 | AAGGCAGG | m7a | Disrupted | NA | NA | No effect |