SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_018699
Gene Symbol: PRDM5
Description: Homo sapiens PR domain containing 5 (PRDM5), mRNA.
Gene Location: chr4(-):121615928-121844013
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.120695006G>C COSN9587447 AOCS-083-1-7 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2278 gacttaCTGCTCTCatagt
 0 GAGAGCAG m8a Created no TS -0.252000 -1.350000
hsa-miR-3672 gacttactgGTCTCATagt
 0 AUGAGACU m7a (m7a->m6a) NA NA 0.080000
hsa-miR-4712-3p gacttactgCTCTCATagt
 3
 AAUGAGAG m7b (m6b->m7b) -0.104000 -0.329000 -0.650000
hsa-miR-4786-5p gacttacTGGTCTCAtagt
 7
 UGAGACCA m8a Disrupted -0.371000 no TS 5.150000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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