SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_004650
Gene Symbol: PNPLA4
Description: Homo sapiens patatin-like phospholipase domain containing 4 (PNPLA4), transcript variant 2, mRNA.
Gene Location: chrX(-):7866803-7895475
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Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chrX:g.7899151A>G ICGC_sm179707 RK035_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chrX:g.7899458T>G 13_236 SJMB035_D Medulloblastoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-24-3p ttgtaCTGAGCCcaggttt
 0 UGGCUCAG m7b Created no TS -0.164 -0.09
hsa-miR-378g ttgtactgAGCCCAGgttt
 0 ACUGGGCU m7b Created no TS -0.166 0.35
hsa-miR-4437 ttgtacTGAGCCCAggttt
 0 UGGGCUCA m8a Created no TS -0.363 -1.62
hsa-miR-450b-3p ttgtactGATCCCAggttt
 0 UUGGGAUC m7b Disrupted -0.17 no TS 1.23
hsa-miR-4674 ttgtactGAGCCCAGgttt
 0 CUGGGCUC m8a Created no TS -0.199 -11.73
hsa-miR-4713-3p ttgtactGATCCCAggttt
 0 UGGGAUCC m7a Disrupted -0.133 no TS 0.06
hsa-miR-4797-3p ttgTACTGAGcccaggttt
 7
 UCUCAGUA m7b (m6c->m7b) no TS -0.028 0.24
hsa-miR-638 ttgtactGATCCCaggttt
 0 AGGGAUCG m6b Disrupted -0.141 no TS 13.91
hsa-miR-769-3p ttgtactGATCCCAGgttt
 0 CUGGGAUC m8a Disrupted -0.17 no TS 2.07

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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